Rroxscaffold_1G00039820

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020533
Physical Location & Seq
Reverse (-)
57505912 .. 57507852
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039820.1

Sequence Viewer

Length: 729 bp
ATGACTATCTTTCTCTTCGAGTTCGATCAGGACCCCTTTGTCCAAACCTCGCTCATTCACATGTACTCGGCTTGTGGCAATTTGATGCTTGCACGCCAAGTATTTAATGTAATTACCCAACCAAATTTGTCCTCTTGGAATTCCATCATAGATGCATATGCGAAAGTGGGTTTGATTGATGCTGCAGGAGAGGTGTTTGATGAAATGCACAGGAGAAATGTGATCTCTTGGAGTTGTATAACATATGCTGAAGTGCTTGCTGTCGTCCTTGTTGGATCATCCAGTGTTTATCTCGCTTTGTTGTTTTTATCTGTTCGATTAGCAGAGAACACTCAACCAAAGAAAAAGGTAAAACTTGCATTGCAGTCCTTGGAGTTTCCACTAGATTTAGAAAAATTGGATCTTCAAGGCATCCCTCTAGCAAAAGTACCACAATGGCTGAACCCGAGAAAACTGAAGAATTTGAAGCTATACGTAAGAGGTGGGGAGCTTCATAGCTTGGATCATGGGGATAGGTGGACAGTGGAAATTTTGCGTCTCAAGTACTTGAGGAAATTGGAAATAGGATTTCAAAAGTTGAAGGAAGAGTTTCCTCATCTGCGCGCGATACCTGTAGAGAAGATCCAATGTCATGAACTTAACACATGTCCTAAAGGGAATCCACATGTGGCCGAGTTGGTAAGATCCTCCAAGTGTGGAACCCCTACACCCGGGTTTGAATCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

242

Amino Acids

27.45

Weight (kDa)

8.48

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 41 - 74 1.2e-07 PPR repeat family
PPR PF01535 44 - 74 5.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020533)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0415431 RchiOBHm_Chr5g0040881
rosa_multiflora Rmu_ssc0000416.1_g000005
rosa_roxburghii Rroxscaffold_1G00039820 Rroxscaffold_5G00359190
rosa_rugosa Rorug05G0188300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccII CGCG 2 cut(s) 603, 605
AclWI GGATC 5 cut(s) 283, 408, 510, 616, 678
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 4 cut(s) 124, 139, 460, 528
AcuI CTGAAG 2 cut(s) 270, 476
AfaI GTAC 3 cut(s) 65, 429, 545
AfiI CCNNNNNNNGG 1 cut(s) 710
AflIII ACRYGT 3 cut(s) 60, 644, 664
AgsI TTSAA 5 cut(s) 407, 466, 572, 580, 719
AluBI AGCT 3 cut(s) 469, 490, 498
AluI AGCT 3 cut(s) 469, 490, 498
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 5 cut(s) 283, 408, 510, 616, 678
Ama87I CYCGRG 2 cut(s) 445, 710
AoxI GGCC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 4 cut(s) 124, 139, 460, 528
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 603, 605
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 2 cut(s) 711, 712
AvaI CYCGRG 2 cut(s) 445, 710
AvaII GGWCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 711, 712
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 383, 419
BfmI CTRYAG 2 cut(s) 183, 612
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 545
Bme1390I CCNGG 2 cut(s) 711, 712
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 2 cut(s) 445, 710
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 33, 700
BmrFI CCNGG 2 cut(s) 711, 712
BmsI GCATC 4 cut(s) 75, 142, 169, 420
BpuEI CTTGAG 2 cut(s) 524, 568
BpuMI CCSGG 2 cut(s) 711, 712
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 369, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 369, 710
BseGI GGATG 2 cut(s) 278, 411
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMI GCAATG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 282
BsePI GCGCGC 1 cut(s) 601
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 2 cut(s) 603, 605
BshFI GGCC 1 cut(s) 671
BsiHKCI CYCGRG 2 cut(s) 445, 710
BsiSI CCGG 1 cut(s) 711
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 1 cut(s) 542
BsmBI CGTCTC 1 cut(s) 542
BsnI GGCC 1 cut(s) 671
BsoBI CYCGRG 2 cut(s) 445, 710
Bsp143I GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
BspANI GGCC 1 cut(s) 671
BspFNI CGCG 2 cut(s) 603, 605
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 33, 700
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 5 cut(s) 283, 408, 510, 616, 678
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 369, 710
BssHII GCGCGC 1 cut(s) 601
BssMI GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 20, 579
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 90, 94, 258, 603
BstF5I GGATG 2 cut(s) 278, 411
BstFNI CGCG 2 cut(s) 603, 605
BstHHI GCGC 2 cut(s) 603, 605
BstKTI GATC 7 cut(s) 28, 225, 278, 403, 505, 624, 686
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
BstNSI RCATGY 3 cut(s) 64, 648, 668
BstSCI CCNGG 2 cut(s) 709, 710
BstSFI CTRYAG 2 cut(s) 183, 612
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 2 cut(s) 603, 605
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 3 cut(s) 400, 621, 683
BstYI RGATCY 3 cut(s) 400, 621, 683
BsuRI GGCC 1 cut(s) 671
BtsCI GGATG 2 cut(s) 278, 411
BtsIMutI CAGTG 2 cut(s) 289, 528
Cac8I GCNNGC 4 cut(s) 90, 94, 258, 603
CciI TCATGA 1 cut(s) 631
CfoI GCGC 2 cut(s) 603, 605
Cfr13I GGNCC 1 cut(s) 31
Cfr9I CCCGGG 1 cut(s) 710
CseI GACGC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 64, 428, 544
CviAII CATG 5 cut(s) 61, 506, 632, 645, 665
CviJI RGCY 6 cut(s) 71, 439, 469, 490, 498, 671
CviKI_1 RGCY 6 cut(s) 71, 439, 469, 490, 498, 671
CviQI GTAC 3 cut(s) 64, 428, 544
DpnI GATC 7 cut(s) 27, 224, 277, 402, 504, 623, 685
DpnII GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 20, 579
EarI CTCTTC 2 cut(s) 20, 579
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 270, 476
Eco88I CYCGRG 2 cut(s) 445, 710
EcoO109I RGGNCCY 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 5 cut(s) 64, 509, 635, 648, 668
FatI CATG 5 cut(s) 60, 505, 631, 644, 664
FauNDI CATATG 2 cut(s) 157, 244
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 265, 398
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 383, 419
GlaI GCGC 2 cut(s) 602, 604
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 671
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 603, 605
Hin1II CATG 5 cut(s) 64, 509, 635, 648, 668
Hin6I GCGC 2 cut(s) 601, 603
HinP1I GCGC 2 cut(s) 601, 603
HinfI GANTC 2 cut(s) 658, 719
HpaII CCGG 1 cut(s) 711
Hpy166II GTNNAC 1 cut(s) 519
Hpy188III TCNNGA 2 cut(s) 29, 632
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 6 cut(s) 92, 155, 185, 208, 359, 364
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 5 cut(s) 64, 509, 635, 648, 668
HspAI GCGC 2 cut(s) 601, 603
Kzo9I GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 6 cut(s) 14, 171, 196, 295, 624, 724
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 4 cut(s) 75, 142, 169, 420
MaeI CTAG 2 cut(s) 383, 419
MaeII ACGT 1 cut(s) 474
MalI GATC 7 cut(s) 27, 224, 277, 402, 504, 623, 685
MboI GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
MboII GAAGA 5 cut(s) 7, 395, 469, 596, 631
MflI RGATCY 3 cut(s) 400, 621, 683
MluCI AATT 8 cut(s) 79, 111, 124, 139, 395, 460, 528, 554
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 8 cut(s) 58, 142, 184, 426, 473, 543, 603, 697
Mph1103I ATGCAT 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 2 cut(s) 105, 639
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 2 cut(s) 711, 712
MvnI CGCG 2 cut(s) 603, 605
NciI CCSGG 2 cut(s) 711, 712
NdeI CATATG 2 cut(s) 157, 244
NdeII GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
NlaIII CATG 5 cut(s) 64, 509, 635, 648, 668
NlaIV GGNNCC 2 cut(s) 33, 700
NmeAIII GCCGAG 2 cut(s) 47, 697
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 3 cut(s) 64, 648, 668
PagI TCATGA 1 cut(s) 631
PauI GCGCGC 1 cut(s) 601
PciI ACATGT 3 cut(s) 60, 644, 664
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 658, 719
PkrI GCNGC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 31
PscI ACATGT 3 cut(s) 60, 644, 664
Psp5II RGGWCCY 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 33, 700
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 3 cut(s) 400, 621, 683
PteI GCGCGC 1 cut(s) 601
RsaI GTAC 3 cut(s) 65, 429, 545
RsaNI GTAC 3 cut(s) 64, 428, 544
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 105, 639
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 7 cut(s) 25, 222, 275, 400, 502, 621, 683
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 545
ScrFI CCNGG 2 cut(s) 711, 712
SfaNI GCATC 4 cut(s) 75, 142, 169, 420
SfcI CTRYAG 2 cut(s) 183, 612
SinI GGWCC 1 cut(s) 31
SmaI CCCGGG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 539, 547
SmoI CTYRAG 2 cut(s) 539, 547
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 8 cut(s) 79, 111, 124, 139, 395, 460, 528, 554
SspMI CTAG 2 cut(s) 383, 419
StyD4I CCNGG 2 cut(s) 709, 710
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 18, 24, 316
TasI AATT 8 cut(s) 79, 111, 124, 139, 395, 460, 528, 554
TatI WGTACW 2 cut(s) 63, 543
TfiI GAWTC 2 cut(s) 658, 719
Tru1I TTAA 2 cut(s) 105, 639
Tru9I TTAA 2 cut(s) 105, 639
TscAI CASTG 2 cut(s) 289, 528
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 216, 482, 648
TspMI CCCGGG 1 cut(s) 710
TspRI CASTG 2 cut(s) 289, 528
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 4 cut(s) 124, 139, 460, 528
XceI RCATGY 3 cut(s) 64, 648, 668
XmaI CCCGGG 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 383, 419
ZrmI AGTACT 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.