RchiOBHm_Chr4g0431151

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
55453867 .. 55456998
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39986

Sequence Viewer

Length: 288 bp
ATGCGTATGTGTAATTACAAGTGCAAGGATCTGACTCAATTCCTTGTTTTTATTTGTGGACTCATCTCGGAGCCCCTTTTGTTTGATCGACTTGAGTTCTCTCTGGTCCTTCCATATGAAGAACACACCCAAAATACCAAATCCCCAAATCCATCTGTGACTGGCGAATCTGGAACTCATGAACATTTCACTCAAACTCAACCCCAAAAGTCAACAACGCAAGGTTATCCATATCTCCTCTCGCCATCGCCACCCATTTCTCTTTGTCACTCGCACGCGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

6.16

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019009)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 278
AclWI GGATC 1 cut(s) 36
AlwI GGATC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 75
BccI CCATC 2 cut(s) 160, 253
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 28, 85
BspFNI CGCG 1 cut(s) 278
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 166
BssMI GATC 2 cut(s) 28, 85
BstC8I GCNNGC 1 cut(s) 276
BstFNI CGCG 1 cut(s) 278
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 31, 88
BstMBI GATC 2 cut(s) 28, 85
BstUI CGCG 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 276
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 1 cut(s) 179
CviJI RGCY 1 cut(s) 73
CviKI_1 RGCY 1 cut(s) 73
DpnI GATC 2 cut(s) 30, 87
DpnII GATC 2 cut(s) 28, 85
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 182
FaiI YATR 5 cut(s) 8, 115, 117, 180, 232
FatI CATG 1 cut(s) 178
FauNDI CATATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 75
GlaI GCGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 3 cut(s) 34, 60, 167
Hpy166II GTNNAC 2 cut(s) 59, 213
Hpy188I TCNGA 2 cut(s) 33, 70
Hpy188III TCNNGA 2 cut(s) 171, 179
Hpy8I GTNNAC 2 cut(s) 59, 213
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 24
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 28, 85
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 89, 147, 156
MaeIII GTNAC 2 cut(s) 157, 266
MalI GATC 2 cut(s) 30, 87
MboI GATC 2 cut(s) 28, 85
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 13, 38, 283
MlyI GAGTC 2 cut(s) 28, 54
MnlI CCTC 1 cut(s) 248
MseI TTAA 1 cut(s) 282
MvnI CGCG 1 cut(s) 278
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 28, 85
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 157, 266
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 167
PleI GAGTC 2 cut(s) 28, 54
PpsI GAGTC 2 cut(s) 28, 54
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 2 cut(s) 28, 85
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 2 cut(s) 28, 54
SduI GDGCHC 1 cut(s) 75
SetI ASST 1 cut(s) 226
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 13, 38, 283
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 13, 38, 283
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 2 cut(s) 157, 266
Tsp45I GTSAC 2 cut(s) 157, 266
TspDTI ATGAA 2 cut(s) 132, 195
VpaK11BI GGWCC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.