Rmu_co8156396.1_g000001

Ribosomal protein-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8156396.1
Physical Location & Seq
Reverse (-)
1 .. 252
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8156396.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atggtcaggagacttgattgtatgcactggcagtggaaaaactgtcccgctggatggtcagggcagtatactggctacaaaggaaaaccaacaatcatcttggaggcggtggcctcttatgttacttggatttggcatgccttcttcggacttgcaggtttcctgaatgatattaatgtctttggatgttcaccgttgttcaatgatgtatgtcttggtcaagctcctcaagttcgttaccat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.28

Weight (kDa)

8.44

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019009)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 68
AciI CCGC 2 cut(s) 48, 107
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 4
AoxI GGCC 1 cut(s) 111
AseI ATTAAT 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 183
BccI CCATC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 4
BfuAI ACCTGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 32, 76
BseGI GGATG 2 cut(s) 59, 191
BseLI CCNNNNNNNGG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 32, 76
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 113
BspACI CCGC 2 cut(s) 48, 107
BspANI GGCC 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 32, 76
BssNAI GTATAC 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 44, 195
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 2 cut(s) 59, 191
BstMAI GTCTC 1 cut(s) 4
BstNSI RCATGY 1 cut(s) 140
BstZ17I GTATAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 59, 191
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 25, 38
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 1 cut(s) 137
CviJI RGCY 3 cut(s) 75, 113, 224
CviKI_1 RGCY 3 cut(s) 75, 113, 224
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 23, 69, 120, 138, 211
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 68
FokI GGATG 2 cut(s) 66, 198
HaeIII GGCC 1 cut(s) 113
Hin1II CATG 1 cut(s) 140
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 69, 191
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 7, 163
Hpy8I GTNNAC 2 cut(s) 69, 191
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 44, 195
HpyCH4V TGCA 2 cut(s) 25, 155
Hsp92II CATG 1 cut(s) 140
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 13, 36, 45, 57, 141, 176
MaeIII GTNAC 2 cut(s) 121, 236
MboII GAAGA 1 cut(s) 136
MnlI CCTC 3 cut(s) 97, 124, 237
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 50
NlaIII CATG 1 cut(s) 140
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 174
SaqAI TTAA 1 cut(s) 174
SetI ASST 2 cut(s) 160, 226
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SphI GCATGC 1 cut(s) 140
SsiI CCGC 2 cut(s) 48, 107
TaaI ACNGT 2 cut(s) 44, 195
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 32, 38
TspRI CASTG 2 cut(s) 32, 38
VspI ATTAAT 1 cut(s) 174
XceI RCATGY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.