Rmu_sc0040065.1_g000003

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040065.1
OG0019009
Physical Location & Seq
Forward (+)
6709 .. 7852
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040065.1_g000003.1.cds

Sequence Viewer

Length: 597 bp
atgatgtctactgctgccttgcaaatccaaactctggaaaatgaggattcacaatggggtggttcttcagaaggtcgtaactataaggccagggatcgagagctgatggatctttatctcaaagctcaatacttcaaggatccatgcagctccagaacagggattcccgggatggtcggtagccttgattgtatgcactgccaatggaaaaattgtcctatcggatgggcagggcagtatactggccacaaggggaaaatgacaatcatcttagaggcggcagcttcctatgatacttggatttggcatgccttctttggacttccaggttccctgaatgatattaacgtccttagatgttcagcgttgtttaatgacgtatgtcttggtgaaacccctgaagtgagctaccagacacaacatttcacaaggatgcaggaagcatacagaaaagacgtggagagatcatttgatgagcatgatgaagatgcagcagagccatttgatcctgatgatatcccaaccaaaccaaggaaagcagagatatataccagaccagtattgacacagatgtttattgcaatccgcaacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

198

Amino Acids

22.6

Weight (kDa)

5.1

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019009)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431151
rosa_multiflora Rmu_co8156396.1_g000001 Rmu_sc0001873.1_g000004 Rmu_sc0005738.1_g000005 Rmu_sc0040065.1_g000003
rosa_roxburghii Rroxscaffold_5G00348370
rosa_rugosa Rorug03G0325900
rosa_samantha Rh5BG387800 Rh6DG049300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccI GTMKAC 2 cut(s) 8, 239
AciI CCGC 2 cut(s) 278, 586
AclWI GGATC 5 cut(s) 102, 117, 134, 147, 500
AcoI YGGCCR 1 cut(s) 244
AcuI CTGAAG 2 cut(s) 51, 420
AfiI CCNNNNNNNGG 3 cut(s) 34, 159, 531
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 89, 325
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 5 cut(s) 103, 125, 150, 284, 408
AluI AGCT 5 cut(s) 103, 125, 150, 284, 408
AlwI GGATC 5 cut(s) 102, 117, 134, 147, 500
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 87, 244
ApeKI GCWGC 4 cut(s) 14, 147, 281, 491
AsuC2I CCSGG 2 cut(s) 168, 169
AsuHPI GGTGA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 167
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 159, 293, 503
BccI CCATC 3 cut(s) 100, 166, 219
BciT130I CCWGG 2 cut(s) 91, 327
BcnI CCSGG 2 cut(s) 168, 169
BisI GCNGC 5 cut(s) 15, 148, 279, 282, 492
BlsI GCNGC 5 cut(s) 16, 149, 280, 283, 493
Bme1390I CCNGG 4 cut(s) 91, 168, 169, 327
BmeT110I CYCGRG 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 141, 331
BmrFI CCNGG 4 cut(s) 91, 168, 169, 327
BmsI GCATC 2 cut(s) 423, 478
BoxI GACNNNNGTC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 168, 169
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 90, 167, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 159, 531
Bse1I ACTGG 2 cut(s) 247, 557
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 2 cut(s) 91, 327
BseDI CCNNGG 3 cut(s) 90, 167, 530
BseGI GGATG 3 cut(s) 177, 230, 438
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 34, 159, 531
BseNI ACTGG 2 cut(s) 247, 557
BseXI GCAGC 3 cut(s) 159, 293, 503
BshFI GGCC 2 cut(s) 89, 246
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 34, 159, 531
BsnI GGCC 2 cut(s) 89, 246
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 5 cut(s) 94, 109, 139, 464, 505
BspACI CCGC 2 cut(s) 278, 586
BspANI GGCC 2 cut(s) 89, 246
BspLI GGNNCC 2 cut(s) 141, 331
BspPI GGATC 5 cut(s) 102, 117, 134, 147, 500
BsrI ACTGG 2 cut(s) 247, 557
BssECI CCNNGG 3 cut(s) 90, 167, 530
BssMI GATC 5 cut(s) 94, 109, 139, 464, 505
BssNAI GTATAC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 530
Bst1107I GTATAC 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 91, 327
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 271, 353
BstF5I GGATG 3 cut(s) 177, 230, 438
BstKTI GATC 5 cut(s) 97, 112, 142, 467, 508
BstMBI GATC 5 cut(s) 94, 109, 139, 464, 505
BstNI CCWGG 2 cut(s) 91, 327
BstNSI RCATGY 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 4 cut(s) 89, 166, 167, 325
BstV1I GCAGC 3 cut(s) 159, 293, 503
BstX2I RGATCY 2 cut(s) 109, 139
BstYI RGATCY 2 cut(s) 109, 139
BstZ17I GTATAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 89, 246
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 3 cut(s) 177, 230, 438
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 167
CviAII CATG 3 cut(s) 144, 308, 479
CviJI RGCY 9 cut(s) 89, 103, 125, 150, 183, 246, 284, 408, 499
CviKI_1 RGCY 9 cut(s) 89, 103, 125, 150, 183, 246, 284, 408, 499
DdeI CTNAG 2 cut(s) 271, 353
DpnI GATC 5 cut(s) 96, 111, 141, 466, 507
DpnII GATC 5 cut(s) 94, 109, 139, 464, 505
EaeI YGGCCR 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 530
Eco32I GATATC 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 51, 420
Eco88I CYCGRG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 89, 325
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 3 cut(s) 147, 311, 482
FatI CATG 3 cut(s) 143, 307, 478
FblI GTMKAC 2 cut(s) 8, 239
Fnu4HI GCNGC 5 cut(s) 15, 148, 279, 282, 492
FokI GGATG 3 cut(s) 184, 237, 445
Fsp4HI GCNGC 5 cut(s) 15, 148, 279, 282, 492
GluI GCNGC 5 cut(s) 15, 148, 279, 282, 492
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 89, 246
HapII CCGG 1 cut(s) 168
Hin1II CATG 3 cut(s) 147, 311, 482
HinfI GANTC 2 cut(s) 47, 163
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 2 cut(s) 9, 240
Hpy188I TCNGA 2 cut(s) 70, 224
Hpy188III TCNNGA 4 cut(s) 35, 98, 153, 509
Hpy8I GTNNAC 2 cut(s) 9, 240
HpyAV CCTTC 2 cut(s) 65, 322
HpyCH4IV ACGT 3 cut(s) 348, 378, 456
HpyCH4V TGCA 6 cut(s) 22, 147, 196, 436, 491, 581
HpyF3I CTNAG 2 cut(s) 271, 353
HpySE526I ACGT 3 cut(s) 348, 378, 456
Hsp92II CATG 3 cut(s) 147, 311, 482
Kzo9I GATC 5 cut(s) 94, 109, 139, 464, 505
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 159, 293, 503
LweI GCATC 2 cut(s) 423, 478
MaeII ACGT 3 cut(s) 348, 378, 456
MaeIII GTNAC 1 cut(s) 77
MalI GATC 5 cut(s) 96, 111, 141, 466, 507
MboI GATC 5 cut(s) 94, 109, 139, 464, 505
MboII GAAGA 2 cut(s) 57, 497
MflI RGATCY 2 cut(s) 109, 139
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 246
MnlI CCTC 2 cut(s) 37, 268
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 2 cut(s) 345, 372
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 4 cut(s) 91, 168, 169, 327
MvaI CCWGG 2 cut(s) 91, 327
NciI CCSGG 2 cut(s) 168, 169
NdeII GATC 5 cut(s) 94, 109, 139, 464, 505
NlaIII CATG 3 cut(s) 147, 311, 482
NlaIV GGNNCC 2 cut(s) 141, 331
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 47, 163
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 5 cut(s) 16, 149, 280, 283, 493
PshAI GACNNNNGTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 89, 325
PspGI CCWGG 2 cut(s) 89, 325
PspN4I GGNNCC 2 cut(s) 141, 331
PsuI RGATCY 2 cut(s) 109, 139
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 2 cut(s) 345, 372
SatI GCNGC 5 cut(s) 15, 148, 279, 282, 492
Sau3AI GATC 5 cut(s) 94, 109, 139, 464, 505
ScrFI CCNGG 4 cut(s) 91, 168, 169, 327
SfaNI GCATC 2 cut(s) 423, 478
SmaI CCCGGG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 431
SphI GCATGC 1 cut(s) 311
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 278, 586
StyD4I CCNGG 4 cut(s) 89, 166, 167, 325
StyI CCWWGG 1 cut(s) 530
TaiI ACGT 3 cut(s) 351, 381, 459
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 211
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 47, 163
Tru1I TTAA 2 cut(s) 345, 372
Tru9I TTAA 2 cut(s) 345, 372
TscAI CASTG 1 cut(s) 203
TseI GCWGC 4 cut(s) 14, 147, 281, 491
TspDTI ATGAA 1 cut(s) 498
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 34
XceI RCATGY 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 167
XmiI GTMKAC 2 cut(s) 8, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.