Rh6DG049300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019009
Physical Location & Seq
Reverse (-)
5272875 .. 5277811
4937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG049300.1

Sequence Viewer

Length: 348 bp
ATGCAGGCCCAGTTGGACGCAAATGATACTTGCTCCCTGGAAATCTCCAGTGCAAAAATCGATGAAGAACACACCCAAAATACCAAAACCCCAAATCCAACTGTGAATGGCGAATCTGGAACTCATGAACACTCGCACTCAAACTCAACCCCAAAAGTCAACAACGCAAGTTGGATCATTATTTTTCCATGTGGTTCCTGTAAAATCAATCCTCTCAAGTTGGAGCTTGCTACATATTCTAGTATGCAGGTTGCCTGTGCTTTCATTTTGTGTTGGGACAAAGAGGTATATATTGGGGAGTGGCTGCGACACTATCACCAATTTCAGTTCCGGATGATAGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

5.79

Isoelectric Point (pI)

21.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019009)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431151
rosa_multiflora Rmu_co8156396.1_g000001 Rmu_sc0001873.1_g000004 Rmu_sc0005738.1_g000005 Rmu_sc0040065.1_g000003
rosa_roxburghii Rroxscaffold_5G00348370
rosa_rugosa Rorug03G0325900
rosa_samantha Rh5BG387800 Rh6DG049300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 330
AclWI GGATC 1 cut(s) 182
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AlwI GGATC 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 308
BbvI GCAGC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 10, 48
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 10, 48
BseXI GCAGC 1 cut(s) 291
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 60
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 1 cut(s) 8
BspDI ATCGAT 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 330
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 10, 48
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 6, 228
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 6, 228
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 26
CviAII CATG 2 cut(s) 125, 189
CviJI RGCY 3 cut(s) 8, 226, 304
CviKI_1 RGCY 3 cut(s) 8, 226, 304
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 128, 192
FaiI YATR 6 cut(s) 126, 190, 235, 245, 289, 291
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 124, 188
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 128, 192
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 117, 125, 331
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 4, 53, 247
Hsp92II CATG 2 cut(s) 128, 192
Kpn2I TCCGGA 1 cut(s) 330
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 38, 223
LpnPI CCDG 9 cut(s) 23, 23, 50, 61, 102, 211, 233, 268, 344
Lsp1109I GCAGC 1 cut(s) 291
MaeI CTAG 1 cut(s) 240
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 77
MluCI AATT 1 cut(s) 320
MmeI TCCRAC 3 cut(s) 122, 152, 201
MnlI CCTC 2 cut(s) 222, 277
MroI TCCGGA 1 cut(s) 330
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 128, 192
NlaIV GGNNCC 1 cut(s) 196
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 7
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 38
SetI ASST 3 cut(s) 228, 252, 288
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 320
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 78, 141, 253
TspRI CASTG 1 cut(s) 55
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.