Rmu_sc0005738.1_g000005

Ribosomal protein-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005738.1
Physical Location & Seq
Reverse (-)
16604 .. 17655
1052 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005738.1_g000005.1.cds

Sequence Viewer

Length: 432 bp
atgcactggaggtggaaaaattatccaacagcttgggcatgtgcttatgtagggcatagtggattgccgacaattattcttgaagcagttgatgattatgatctttggatatggcatgcatattttggcttaccaggctctaacaatgacatcaatgtttggaagcatcctacttattggtggagcttgttgcagatagatgaagaacacacccaaaataccaaaaccccaaatccaactgtgaatgacgaatctggaactcatgaagactcgcactcaaactcaaccccaaaagtcaacaacacaaggttctccatctctcatgcgtcatcgccacctatctccgctttcttcctcgcactcactcaattagtttgggtcttctttatcgctcgcactcactcgcaaggttctcccttgatctctggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.32

Weight (kDa)

5.92

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019009)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 345
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 32, 186
AluI AGCT 2 cut(s) 32, 186
BbsI GAAGAC 2 cut(s) 273, 373
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 2 cut(s) 273, 373
BpmI CTGGAG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 99
BseNI ACTGG 1 cut(s) 11
Bsp143I GATC 2 cut(s) 100, 420
BspACI CCGC 1 cut(s) 345
BspHI TCATGA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 11
BssMI GATC 2 cut(s) 100, 420
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 117, 394
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 103, 423
BstMBI GATC 2 cut(s) 100, 420
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 2 cut(s) 42, 119
BstSCI CCNGG 1 cut(s) 133
BstV2I GAAGAC 2 cut(s) 273, 373
BstXI CCANNNNNNTGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 117, 394
CciI TCATGA 1 cut(s) 262
CseI GACGC 1 cut(s) 315
CviAII CATG 4 cut(s) 39, 116, 263, 323
CviJI RGCY 4 cut(s) 32, 129, 138, 186
CviKI_1 RGCY 4 cut(s) 32, 129, 138, 186
DpnI GATC 2 cut(s) 102, 422
DpnII GATC 2 cut(s) 100, 420
EcoRII CCWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 4 cut(s) 42, 119, 266, 326
FaiI YATR 9 cut(s) 40, 48, 57, 99, 112, 117, 121, 264, 324
FatI CATG 4 cut(s) 38, 115, 262, 322
FokI GGATG 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 28
HgaI GACGC 1 cut(s) 315
Hin1II CATG 4 cut(s) 42, 119, 266, 326
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 251, 269
Hpy166II GTNNAC 1 cut(s) 298
Hpy188III TCNNGA 4 cut(s) 80, 255, 263, 426
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 4, 119, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 42, 119, 266, 326
Kzo9I GATC 2 cut(s) 100, 420
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 120, 147, 240, 411
LweI GCATC 1 cut(s) 175
MalI GATC 2 cut(s) 102, 422
MboI GATC 2 cut(s) 100, 420
MboII GAAGA 4 cut(s) 215, 278, 343, 373
MluCI AATT 3 cut(s) 19, 72, 368
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 50, 260
MnlI CCTC 2 cut(s) 3, 365
Mph1103I ATGCAT 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 2 cut(s) 100, 420
NlaIII CATG 4 cut(s) 42, 119, 266, 326
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 2 cut(s) 42, 119
PaeI GCATGC 1 cut(s) 119
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
Sau3AI GATC 2 cut(s) 100, 420
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 135
SetI ASST 6 cut(s) 14, 34, 188, 311, 340, 412
SfaNI GCATC 1 cut(s) 175
SphI GCATGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 19, 72, 368
SsiI CCGC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 241
TasI AATT 3 cut(s) 19, 72, 368
TfiI GAWTC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 216, 279
XceI RCATGY 2 cut(s) 42, 119
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.