Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Reverse (-)

58922756 .. 58923304

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40373

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAACTTGTAAACAGCAACTCCACATACATTGATTTCGATCTTTGCAACTCTAAATCACGGAATGTGAAAGTGTGGTCAGAAGTTCAAGAGGACAAGTTTGTTTTAGACAAAGGTTGGTCAGTTGGTCACTTGACCACTGTGTTGGGAATAGATGGAAGTGGTGGATCACCAGCTCTTGGGCTGTGTTTGGTTCCCAGAATCAGAGCCTTAGGAAAGGAAATTCATTCCTTTCCAGTGTTTGGGATTGCAAAGGAAGGGAAACTGACTCCCAAAGGAAAGGAAATTGCGGGGGAAATTGCTTCCCGCCCACCCACCCCAGGATTCACTTTCCATCCTAATAAAATGACTAAACTATCCTCGCTTAAAATTGAAATTTGCTGGTTTGATCTGCAATACCATCGAGCTCTGTGTCAGGCGTGTGTTTTGGAGAGTTTGAGTCATTTCCAAACACTGTGTCAGATAGCACTCATATCACGAACCAGTGAAGCACACACGAAACCATTCATCTTGTTATCATCTTCCTCGCACAGCAGCTTCCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

182

Amino Acids

20.05

Weight (kDa)

8.75

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	179, 242
AciI	CCGC	2 cut(s)	290, 307
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	222, 375
AfiI	CCNNNNNNNGG	3 cut(s)	179, 242, 320
AgsI	TTSAA	2 cut(s)	89, 374
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	176, 407, 537
AluI	AGCT	3 cut(s)	176, 407, 537
Alw21I	GWGCWC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	2 cut(s)	222, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
Asp700I	GAANNNNTTC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BccI	CCATC	3 cut(s)	149, 342, 408
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 242, 320
Bse1I	ACTGG	2 cut(s)	236, 483
Bse21I	CCTNAGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	179, 242, 320
BseNI	ACTGG	2 cut(s)	236, 483
BsiHKAI	GWGCWC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	179, 242, 320
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	40, 167, 388
BspACI	CCGC	2 cut(s)	290, 307
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	236, 483
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	40, 167, 388
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	142, 456
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	43, 170, 391
BstMBI	GATC	3 cut(s)	40, 167, 388
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	4 cut(s)	138, 243, 452, 490
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviJI	RGCY	5 cut(s)	176, 184, 209, 407, 537
CviKI_1	RGCY	5 cut(s)	176, 184, 209, 407, 537
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	3 cut(s)	42, 169, 390
DpnII	GATC	3 cut(s)	40, 167, 388
Ecl136II	GAGCTC	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	409
FaiI	YATR	2 cut(s)	28, 473
FauI	CCCGC	2 cut(s)	283, 314
Fnu4HI	GCNGC	1 cut(s)	535
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	535
GluI	GCNGC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	201, 268, 324, 439
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	82, 206, 462
Hpy188III	TCNNGA	2 cut(s)	89, 477
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	142, 456
HpyCH4V	TGCA	3 cut(s)	48, 251, 394
HpyF3I	CTNAG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	40, 167, 388
LpnPI	CCDG	8 cut(s)	186, 211, 249, 306, 333, 367, 401, 496
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	42, 169, 390
MboI	GATC	3 cut(s)	40, 167, 388
MboII	GAAGA	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	5 cut(s)	222, 285, 297, 369, 375
MlyI	GAGTC	2 cut(s)	262, 448
MnlI	CCTC	3 cut(s)	85, 370, 535
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	366, 547
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	40, 167, 388
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	201, 324
PflMI	CCANNNNNTGG	2 cut(s)	179, 242
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	2 cut(s)	262, 447
PpsI	GAGTC	2 cut(s)	262, 447
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	366, 547
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	3 cut(s)	40, 167, 388
SchI	GAGTC	2 cut(s)	262, 448
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	4 cut(s)	118, 178, 409, 539
Sse9I	AATT	5 cut(s)	222, 285, 297, 369, 375
SsiI	CCGC	2 cut(s)	290, 307
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	142, 456
TaqI	TCGA	2 cut(s)	39, 403
TasI	AATT	5 cut(s)	222, 285, 297, 369, 375
TfiI	GAWTC	2 cut(s)	201, 324
Tru1I	TTAA	2 cut(s)	366, 547
Tru9I	TTAA	2 cut(s)	366, 547
TscAI	CASTG	4 cut(s)	145, 243, 459, 490
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	17, 215, 496
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	4 cut(s)	145, 243, 459, 490
Van91I	CCANNNNNTGG	2 cut(s)	179, 242
XapI	RAATTY	2 cut(s)	222, 375
XmnI	GAANNNNTTC	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.