Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Reverse (-)

58923383 .. 58923676

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGTGAATGCTATGGATTGAGTACGCAATTCTTGCTAGGTAGCAGTCTTATGGTATCTCCAGTTCTTGAGAAAGGAAATTCAACAGTTAAAGCATTCTTTCCCCCTGGAACATGGTACAGTTTGTTTGATATGAGACAGGTCATTGTATCAAAACAGGGGAAATATGTTACACTTGATGCGCCTTTGCAGGTAATCAACGTGCATTTGTATCAGAATACCATTCTACCAATGCAGCAGGGTGGAGTGTTATCTAAAGCAGCTAGAACAATCCCTTTTAGCCTCTCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

97

Amino Acids

10.66

Weight (kDa)

9.25

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_3rd	PF21365	3 - 76	2.4e-15	Glycosyl hydrolase family 31 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	2 cut(s)	25, 119
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	235, 260
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	247, 272
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	38, 264
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	236, 261
BlsI	GCNGC	2 cut(s)	237, 262
Bme1390I	CCNGG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	247, 272
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	14, 95
BspMI	ACCTGC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	88, 122
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	247, 272
BveI	ACCTGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	24, 118
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	2 cut(s)	263, 282
CviKI_1	RGCY	2 cut(s)	263, 282
CviQI	GTAC	2 cut(s)	24, 118
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	117
FaiI	YATR	6 cut(s)	15, 53, 115, 134, 168, 292
FatI	CATG	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	236, 261
Fsp4HI	GCNGC	2 cut(s)	236, 261
FspBI	CTAG	2 cut(s)	38, 264
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	236, 261
GsuI	CTGGAG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	88, 122
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	190, 205, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	75, 93, 120, 125, 143, 176, 224
Lsp1109I	GCAGC	2 cut(s)	247, 272
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	38, 264
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	169
MluCI	AATT	2 cut(s)	29, 79
MnlI	CCTC	1 cut(s)	293
MseI	TTAA	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	2 cut(s)	14, 95
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	117
PctI	GAATGC	2 cut(s)	14, 95
PkrI	GCNGC	2 cut(s)	237, 262
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	48, 80
RsaI	GTAC	2 cut(s)	25, 119
RsaNI	GTAC	2 cut(s)	24, 118
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	236, 261
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	5 cut(s)	43, 144, 195, 204, 265
SfaNI	GCATC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	29, 79
SspMI	CTAG	2 cut(s)	38, 264
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	88, 122
TaiI	ACGT	1 cut(s)	204
TasI	AATT	2 cut(s)	29, 79
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	235, 260
XapI	RAATTY	1 cut(s)	79
XspI	CTAG	2 cut(s)	38, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.