Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Forward (+)

8863612 .. 8864292

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAATCTCCAGTTCTTGAGAAAGGAAATTCAACGGTTAAAGCATTCTTTCCCCCTGGAACATGGTACAGTTTGTTTGATACGAGACAGGTCATTGTATCAAAACAGGGGAAATATGTTTCACTTGATGCGCCTTTGCAGGGTAACTTGTTCCTTGACAACGACGAGCTTCCAGAAATGAAACTTGTAAGCGGCAACTCCACATACATTGATTTCGATCTTTGCAACTCTAAATCACGGAATGTGAAAGTGTGGTCAGAAGTTCAGGAGGACAAGTTTGCTTTAGACAAAGGTTGGTCAGTTGGTCACTTGACCACTGTGTTGGGAATAGATGGAAGTGGTGGATCATCAGCTCTTGAGGTTAATGGAAACTCAGTGAAAAGTGTTTTGAGACATAAAGTTGAGTGCAACGAAGCATACGTACCTAGAACTCTAGAAGATATCAAAAAAGAAAAGAAGAAGACCAAGAGCGTAATGGTAGAGGTTTGTGGTTTGTCACTCCCTATAGGTAAAAACTTCGCCGTGTCATGGAAAATCGGTACAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

8.34

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	3 cut(s)	68, 423, 541
AfiI	CCNNNNNNNGG	2 cut(s)	140, 528
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	169, 353, 548
AluI	AGCT	3 cut(s)	169, 353, 548
Alw26I	GTCTC	2 cut(s)	79, 385
AlwI	GGATC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbsI	GAAGAC	1 cut(s)	467
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	79, 385
BfaI	CTAG	2 cut(s)	426, 434
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	38, 377
BsaAI	YACGTR	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 528
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	140, 528
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	140, 528
BsmAI	GTCTC	2 cut(s)	79, 385
BsmI	GAATGC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	217, 344
BspACI	CCGC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	386
BspPI	GGATC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	217, 344
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	3 cut(s)	37, 71, 319
BstBAI	YACGTR	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	220, 347
BstMAI	GTCTC	2 cut(s)	79, 385
BstMBI	GATC	2 cut(s)	217, 344
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	504
BstSNI	TACGTA	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	315, 381
CfoI	GCGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	67, 422, 540
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	2 cut(s)	63, 528
CviJI	RGCY	3 cut(s)	169, 353, 548
CviKI_1	RGCY	3 cut(s)	169, 353, 548
CviQI	GTAC	3 cut(s)	67, 422, 540
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	2 cut(s)	219, 346
DpnII	GATC	2 cut(s)	217, 344
Eco105I	TACGTA	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	2 cut(s)	66, 531
FaiI	YATR	7 cut(s)	64, 117, 205, 396, 418, 506, 529
FatI	CATG	2 cut(s)	62, 527
Fnu4HI	GCNGC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	2 cut(s)	426, 434
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	66, 531
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	5 cut(s)	17, 173, 266, 356, 434
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	37, 71, 319
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	139, 225, 408
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	66, 531
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	217, 344
LpnPI	CCDG	8 cut(s)	24, 42, 69, 74, 92, 125, 186, 251
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	426, 434
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	143, 305, 495
MalI	GATC	2 cut(s)	219, 346
MboI	GATC	2 cut(s)	217, 344
MboII	GAAGA	3 cut(s)	449, 469, 472
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	3 cut(s)	262, 352, 475
MseI	TTAA	2 cut(s)	39, 363
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	217, 344
NlaIII	CATG	2 cut(s)	66, 531
NmuCI	GTSAC	2 cut(s)	305, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
RsaI	GTAC	3 cut(s)	68, 423, 541
RsaNI	GTAC	3 cut(s)	67, 422, 540
SaqAI	TTAA	2 cut(s)	39, 363
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	2 cut(s)	217, 344
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	17, 356
SmoI	CTYRAG	2 cut(s)	17, 356
SnaBI	TACGTA	1 cut(s)	421
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	426, 434
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	3 cut(s)	37, 71, 319
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	39, 363
Tru9I	TTAA	2 cut(s)	39, 363
TscAI	CASTG	2 cut(s)	322, 381
TseFI	GTSAC	2 cut(s)	305, 495
Tsp45I	GTSAC	2 cut(s)	305, 495
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	322, 381
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	2 cut(s)	426, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.