Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Reverse (-)

61948890 .. 61950327

Gene Structure 1438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG362800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCCTTACTGGCTTTTGCATGAGGGTGAACCCTTCTTGACCCAAGTTGCACCAAGGCCTGTAACCTTCCCGGACTACCTCAACCCCAAAACTGTGTCATGGCGGGGTGATGAGATCCGCCGCTTTCATGAACTTGTCCCTATTGTTGGCTTATGGATTGACTTGAACAAGGCTGCAGGTTTCTGTTCTGATAAGTGCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

68

Amino Acids

7.91

Weight (kDa)

6.7

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	8 - 66	4e-07	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	3 cut(s)	103, 118, 121
AclWI	GGATC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	166
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	38, 119
BbvI	GCAGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	121, 174
BlsI	GCNGC	2 cut(s)	122, 175
Bme1390I	CCNGG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	3 cut(s)	103, 118, 121
BspANI	GGCC	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	94
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	127
CviAII	CATG	3 cut(s)	20, 99, 128
CviJI	RGCY	4 cut(s)	13, 58, 150, 173
CviKI_1	RGCY	4 cut(s)	13, 58, 150, 173
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	23, 102, 131
FaiI	YATR	4 cut(s)	21, 100, 129, 154
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	19, 98, 127
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	121, 174
Fsp4HI	GCNGC	2 cut(s)	121, 174
GluI	GCNGC	2 cut(s)	121, 174
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	3 cut(s)	23, 102, 131
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	38, 119
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	37, 128
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	43, 76
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	19, 50, 176, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	23, 102, 131
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	3 cut(s)	72, 84, 162
Lsp1109I	GCAGC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MflI	RGATCY	1 cut(s)	114
MnlI	CCTC	2 cut(s)	16, 89
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	3 cut(s)	23, 102, 131
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	122, 175
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	121, 174
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	3 cut(s)	68, 81, 181
SfcI	CTRYAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	24
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	3 cut(s)	103, 118, 121
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	116, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.