Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Forward (+)

8858000 .. 8859478

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCTTACTGGGCTTTTGGATTTCACCAATCCAGATGGGGTTACCAAGACTTATTAGTGGTTGAAGATGTAGTCGAGAACTATCAAAAGGCTCGAATTCCATTAGATGTCATTTGGAATGATGATGATCACATAGAGAGAAAATTAGGCTTCACTCTCAATCGCAACAACTACTCTCGGACAAAGCTTTTGGCATTTCATGAGGGTGAACCCTTCTTGACCCAAGTTGCACCAGGGCCTGTAACCTTCCCGGACTACCTCAACCCCAAAATTGTGTCATGGCGGGGTGATGAGATCCACCGCTTTCATGAACTTGTCCCTATTGTTGGCTTATGGATTGACTTGAACAAGGCTGCAGCAAAAACCTTACAAAGTCGAGATGGGATGATCCACCTTACAAAATCAACGCTTAAGGAGTGCAGGCGCCCATGGGGACCTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

149

Amino Acids

17.32

Weight (kDa)

6.59

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	1 - 61	1.6e-17	Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_2nd	PF01055	67 - 122	9.9e-06	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	2 cut(s)	283, 301
AclWI	GGATC	2 cut(s)	289, 382
AcsI	RAATTY	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	65, 346
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwI	GGATC	2 cut(s)	289, 382
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	353, 356
ApoI	RAATTY	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	236, 434
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	17, 218, 299
AvaII	GGWCC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	340, 368
BccI	CCATC	2 cut(s)	30, 374
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	427
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
Bme1390I	CCNGG	2 cut(s)	234, 251
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	236, 434
BmiI	GGNNCC	2 cut(s)	425, 435
BmrFI	CCNGG	2 cut(s)	234, 251
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	233, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	233, 428
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	340, 368
BsgI	GTGCAG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	127, 294, 387
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	2 cut(s)	283, 301
BspANI	GGCC	1 cut(s)	238
BspHI	TCATGA	2 cut(s)	199, 307
BspLI	GGNNCC	2 cut(s)	425, 435
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	2 cut(s)	289, 382
BspT107I	GGYRCC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	233, 428
BssMI	GATC	3 cut(s)	127, 294, 387
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	428
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	130, 297, 390
BstMBI	GATC	3 cut(s)	127, 294, 387
BstNI	CCWGG	1 cut(s)	234
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	232, 249
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	340, 368
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	2 cut(s)	199, 307
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	236, 434
CviAII	CATG	4 cut(s)	200, 279, 308, 429
CviJI	RGCY	7 cut(s)	14, 92, 150, 187, 238, 330, 353
CviKI_1	RGCY	7 cut(s)	14, 92, 150, 187, 238, 330, 353
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	3 cut(s)	129, 296, 389
DpnII	GATC	3 cut(s)	127, 294, 387
Eco130I	CCWWGG	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	236, 434
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	428
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	203, 282, 311, 432
FaiI	YATR	7 cut(s)	134, 201, 280, 309, 334, 430, 445
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	199, 278, 307, 428
FauI	CCCGC	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	354, 357
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	2 cut(s)	354, 357
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	203, 282, 311, 432
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	3 cut(s)	17, 218, 299
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	6 cut(s)	33, 76, 200, 217, 308, 377
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	223, 256
HpyCH4V	TGCA	3 cut(s)	230, 356, 420
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	203, 282, 311, 432
HspAI	GCGC	1 cut(s)	424
KasI	GGCGCC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 294, 387
LpnPI	CCDG	6 cut(s)	46, 219, 246, 252, 264, 406
Lsp1109I	GCAGC	2 cut(s)	340, 368
MaeIII	GTNAC	2 cut(s)	41, 241
MalI	GATC	3 cut(s)	129, 296, 389
MboI	GATC	3 cut(s)	127, 294, 387
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	3 cut(s)	96, 143, 270
Mly113I	GGCGCC	1 cut(s)	424
MnlI	CCTC	2 cut(s)	196, 269
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	234, 251
MvaI	CCWGG	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	3 cut(s)	127, 294, 387
NlaIII	CATG	4 cut(s)	203, 282, 311, 432
NlaIV	GGNNCC	2 cut(s)	425, 435
PagI	TCATGA	2 cut(s)	199, 307
PfeI	GAWTC	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	355, 358
PluTI	GGCGCC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	425, 435
PspPI	GGNCC	2 cut(s)	236, 434
PspPPI	RGGWCCY	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	354, 357
Sau3AI	GATC	3 cut(s)	127, 294, 387
Sau96I	GGNCC	2 cut(s)	236, 434
ScrFI	CCNGG	2 cut(s)	234, 251
SetI	ASST	6 cut(s)	189, 248, 261, 368, 396, 439
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	96, 143, 270
SsiI	CCGC	2 cut(s)	283, 301
SspDI	GGCGCC	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	232, 249
StyI	CCWWGG	1 cut(s)	428
TaqI	TCGA	3 cut(s)	75, 94, 376
TasI	AATT	3 cut(s)	96, 143, 270
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	2 cut(s)	353, 356
TspDTI	ATGAA	3 cut(s)	188, 296, 324
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.