RchiOBHm_Chr4g0437561

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018289
Physical Location & Seq
Forward (+)
60569772 .. 60573241
3470 bp
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UTR
Exon/CDS
Intron
PRQ40581

Sequence Viewer

Length: 153 bp
ATGTGGAAGGATGTCACGATGAAGATTATGACATTCTCTCAACAAGGATCTCATGCTATTTGCATACTTTCTGCAAATGGTACCATATCAAATGTCACACTTCGACAGCCCAGTACTTCTGGAGGTACTTTTAACATACGAGGGCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

50

Amino Acids

5.41

Weight (kDa)

10.05

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 4 - 37 2.2e-06 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00200 AT4G00200
rosa_chinensis RchiOBHm_Chr4g0437561
rosa_roxburghii Rroxscaffold_2G00091570
rosa_rugosa Rorug01G0356200 Rorug02G0061400
rosa_samantha Rh1DG306100 Rh2AG329400 Rh6DG240300
rosa_wichuraiana Rw5G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AclWI GGATC 1 cut(s) 55
AfaI GTAC 3 cut(s) 82, 115, 127
AlwI GGATC 1 cut(s) 55
Asp718I GGTACC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtsCI GGATG 1 cut(s) 16
Csp6I GTAC 3 cut(s) 81, 114, 126
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 109, 145
CviKI_1 RGCY 2 cut(s) 109, 145
CviQI GTAC 3 cut(s) 81, 114, 126
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
FaeI CATG 1 cut(s) 56
FaiI YATR 5 cut(s) 29, 54, 65, 86, 137
FatI CATG 1 cut(s) 52
FokI GGATG 1 cut(s) 23
FspEI CC 9 cut(s) 30, 63, 97, 105, 108, 123, 124, 126, 127
GsuI CTGGAG 1 cut(s) 141
Hin1II CATG 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 16, 120
HpyCH4V TGCA 2 cut(s) 63, 74
Hsp92II CATG 1 cut(s) 56
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 105, 124
MaeIII GTNAC 2 cut(s) 13, 94
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 47
MnlI CCTC 2 cut(s) 116, 134
MseI TTAA 1 cut(s) 132
NdeII GATC 1 cut(s) 47
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 13, 94
PspN4I GGNNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 3 cut(s) 82, 115, 127
RsaNI GTAC 3 cut(s) 81, 114, 126
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 115
SetI ASST 1 cut(s) 127
SgeI CNNG 5 cut(s) 28, 56, 65, 123, 132
TaqI TCGA 1 cut(s) 103
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 2 cut(s) 13, 94
Tsp45I GTSAC 2 cut(s) 13, 94
TspDTI ATGAA 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.