Rh2AG329400

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018289
Physical Location & Seq
Reverse (-)
47370239 .. 47373143
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG329400.1

Sequence Viewer

Length: 390 bp
ATGGCTTCCTTCCTCCGCATTCATCATCAATTTAAGTTTCTTATTCTCTCCAGCCCCAATTCCCACGTCAGTCAGCCCATCGTCGACCGCTTGCTCTCCGATTACTTTGAGCGGACCACTAAGGACTACCTCTCCATGGGCCTTTGGCGATCTCTGTCGTGCAGCGTCTCGCAGAGCGGCCAGGTCTCTCAGCTCTCGTCACCGGCAGAGCTTCTAGAATTAGATGTCACGATGAAGATTATGACATTCTCTCAACAAGGATCTCGTGGTATTTGCATACTTTCTGCAAATGGTACCATATCAAATGTCACACTTCGACAGCCCAGTACTTCTGGAGGTACTTTTAACATACGAGGTACGGCCTTCCGTCCTTTGCGAGTGTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

9.88

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00200 AT4G00200
rosa_chinensis RchiOBHm_Chr4g0437561
rosa_roxburghii Rroxscaffold_2G00091570
rosa_rugosa Rorug01G0356200 Rorug02G0061400
rosa_samantha Rh1DG306100 Rh2AG329400 Rh6DG240300
rosa_wichuraiana Rw5G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 2 cut(s) 112, 177
AccI GTMKAC 1 cut(s) 84
AciI CCGC 4 cut(s) 16, 88, 112, 177
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 4 cut(s) 295, 328, 340, 358
AfiI CCNNNNNNNGG 1 cut(s) 136
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 193, 211
AluI AGCT 2 cut(s) 193, 211
Alw26I GTCTC 2 cut(s) 172, 190
AlwI GGATC 1 cut(s) 268
AoxI GGCC 3 cut(s) 139, 178, 360
ApeKI GCWGC 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 114, 139
AsuHPI GGTGA 1 cut(s) 192
AvaII GGWCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 293
BauI CACGAG 1 cut(s) 264
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 172, 190
BfaI CTAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 163, 178
BlsI GCNGC 2 cut(s) 164, 179
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 114, 139
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 34, 354
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 141, 180, 362
BshNI GGYRCC 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 172, 190
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 3 cut(s) 141, 180, 362
Bso31I GGTCTC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 149, 260
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 4 cut(s) 16, 88, 112, 177
BspANI GGCC 3 cut(s) 141, 180, 362
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 190
BsrBI CCGCTC 2 cut(s) 112, 177
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 149, 260
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 120, 189
BstDSI CCRYGG 1 cut(s) 135
BstKTI GATC 2 cut(s) 152, 263
BstMAI GTCTC 2 cut(s) 172, 190
BstMBI GATC 2 cut(s) 149, 260
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 3 cut(s) 141, 180, 362
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 114, 139
CseI GACGC 1 cut(s) 154
Csp6I GTAC 4 cut(s) 294, 327, 339, 357
CviAII CATG 1 cut(s) 136
CviJI RGCY 9 cut(s) 5, 54, 76, 141, 180, 193, 211, 322, 362
CviKI_1 RGCY 9 cut(s) 5, 54, 76, 141, 180, 193, 211, 322, 362
CviQI GTAC 4 cut(s) 294, 327, 339, 357
DdeI CTNAG 2 cut(s) 120, 189
DpnI GATC 2 cut(s) 151, 262
DpnII GATC 2 cut(s) 149, 260
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 137, 242, 278, 299, 350
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 163, 178
Fsp4HI GCNGC 2 cut(s) 163, 178
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 163, 178
GsuI CTGGAG 2 cut(s) 34, 354
HaeIII GGCC 3 cut(s) 141, 180, 362
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 215, 229, 333
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 19, 373
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 162, 276, 287
HpyF3I CTNAG 2 cut(s) 120, 189
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 139
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 149, 260
LpnPI CCDG 6 cut(s) 64, 167, 194, 216, 318, 337
Lsp1109I GCAGC 1 cut(s) 174
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 198, 226, 307
MalI GATC 2 cut(s) 151, 262
MbiI CCGCTC 2 cut(s) 112, 177
MboI GATC 2 cut(s) 149, 260
MboII GAAGA 1 cut(s) 247
MflI RGATCY 1 cut(s) 260
MluCI AATT 3 cut(s) 29, 58, 218
MnlI CCTC 4 cut(s) 23, 140, 329, 347
MseI TTAA 2 cut(s) 33, 345
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 149, 260
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 3 cut(s) 198, 226, 307
PctI GAATGC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 164, 179
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 114, 139
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 4 cut(s) 295, 328, 340, 358
RsaNI GTAC 4 cut(s) 294, 327, 339, 357
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 33, 345
SatI GCNGC 2 cut(s) 163, 178
Sau3AI GATC 2 cut(s) 149, 260
Sau96I GGNCC 2 cut(s) 114, 139
ScaI AGTACT 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 182
SetI ASST 7 cut(s) 69, 132, 186, 195, 213, 340, 358
SinI GGWCC 1 cut(s) 114
Sse9I AATT 3 cut(s) 29, 58, 218
SsiI CCGC 4 cut(s) 16, 88, 112, 177
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 84, 316
TasI AATT 3 cut(s) 29, 58, 218
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 33, 345
Tru9I TTAA 2 cut(s) 33, 345
TseFI GTSAC 3 cut(s) 198, 226, 307
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 3 cut(s) 198, 226, 307
TspDTI ATGAA 2 cut(s) 11, 248
TspGWI ACGGA 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.