Rh1DG306100

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018289
Physical Location & Seq
Reverse (-)
53301043 .. 53303301
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG306100.1

Sequence Viewer

Length: 336 bp
ATGTTGAAAATGGAGCACGCGGTCGTTCCCCTGAGGAGGTGCTGGAGCACGTGTTCTCGTTCCTGCAGTTGGATGGCGACCAGAACTCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGAGCTGAAAATTCAGAGCTTCGGTTTTTGCATTATCGGTAATCTGTTCTTGGCCCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCAACTGAGAATGAAGGAACAAAGAGCAGGTCAGGTGGCATGAGCGTCTCTTTGGCAGGTTCAGATGGTAGAGTTGTTGGACTGGCTGGTCTATTGATAGCTGCAAGACCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

111

Amino Acids

12.05

Weight (kDa)

10.41

Isoelectric Point (pI)

77.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00200 AT4G00200
rosa_chinensis RchiOBHm_Chr4g0437561
rosa_roxburghii Rroxscaffold_2G00091570
rosa_rugosa Rorug01G0356200 Rorug02G0061400
rosa_samantha Rh1DG306100 Rh2AG329400 Rh6DG240300
rosa_wichuraiana Rw5G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 306
Acc36I ACCTGC 2 cut(s) 237, 266
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 20, 126
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 138
AcvI CACGTG 1 cut(s) 51
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 36, 69
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 1 cut(s) 7
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 3 cut(s) 133, 147, 320
AluI AGCT 3 cut(s) 133, 147, 320
Alw21I GWGCWC 2 cut(s) 18, 50
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 217
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 18, 50
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 67, 278
BcoDI GTCTC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 64
BfuAI ACCTGC 2 cut(s) 237, 266
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 69
Bse1I ACTGG 1 cut(s) 306
Bse21I CCTNAGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 36, 69
BseMII CTCAG 2 cut(s) 23, 216
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 18, 50
BslI CCNNNNNNNGG 2 cut(s) 36, 69
BsmAI GTCTC 1 cut(s) 271
BsmBI CGTCTC 1 cut(s) 271
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 18, 50
Bsp143I GATC 3 cut(s) 89, 119, 209
BspACI CCGC 2 cut(s) 20, 126
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 24, 217
BspFNI CGCG 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 68
BspMI ACCTGC 2 cut(s) 237, 266
BspPI GGATC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 306
BssMI GATC 3 cut(s) 89, 119, 209
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 32, 225
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 92, 122, 212
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 89, 119, 209
BstMCI CGRYCG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 78
BveI ACCTGC 2 cut(s) 237, 266
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 133, 147, 182, 305, 320
CviKI_1 RGCY 5 cut(s) 133, 147, 182, 305, 320
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 32, 225
DpnI GATC 3 cut(s) 91, 121, 211
DpnII GATC 3 cut(s) 89, 119, 209
DrdI GACNNNNNNGTC 1 cut(s) 306
DseDI GACNNNNNNGTC 1 cut(s) 306
Eco72I CACGTG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 214, 216, 218, 260
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 182
HgaI GACGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 262
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 144, 283
Hpy188III TCNNGA 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 4 cut(s) 66, 104, 159, 323
HpyF3I CTNAG 2 cut(s) 32, 225
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 3 cut(s) 89, 119, 209
LmnI GCTCC 2 cut(s) 13, 45
Lsp1109I GCAGC 1 cut(s) 307
MaeII ACGT 1 cut(s) 50
MalI GATC 3 cut(s) 91, 121, 211
MbiI CCGCTC 1 cut(s) 126
MboI GATC 3 cut(s) 89, 119, 209
MhlI GDGCHC 2 cut(s) 18, 50
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 50, 277
MnlI CCTC 2 cut(s) 27, 30
MvnI CGCG 1 cut(s) 20
NdeII GATC 3 cut(s) 89, 119, 209
NlaIII CATG 1 cut(s) 262
PkrI GCNGC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 51
PspCI CACGTG 1 cut(s) 51
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 68
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 3 cut(s) 89, 119, 209
Sau96I GGNCC 1 cut(s) 181
SduI GDGCHC 2 cut(s) 18, 50
SetI ASST 9 cut(s) 41, 53, 135, 149, 251, 256, 280, 322, 331
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 20, 126
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 88, 122
TasI AATT 1 cut(s) 138
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 189, 246
XapI RAATTY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.