RchiOBHm_Chr4g0439591

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
62002820 .. 62003414
595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40764

Sequence Viewer

Length: 243 bp
ATGCGTATGAGAATTGGAATGGATGGATTTGTAGAAGGGTTGATTCAAATGAAGGAAATGAGATTTGAGAGATGGCTATTGGAGAAGTGGGGAATTAAGGTTTTGGGCGGCAGAGCTATGGCGTTGGTGATGACAGTGGGGATTGGGGCATGGAGCTGTTTGGCCTGGGATTGGGATTTGTTGGTACTGGGATTTTTGAAGAAGGTTTTGAGCAGGGTTTGGATGGAGCTCATGGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.3

Weight (kDa)

9.23

Isoelectric Point (pI)

20.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019011)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 47, 199
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 116, 156, 229
AluI AGCT 3 cut(s) 116, 156, 229
Alw21I GWGCWC 1 cut(s) 231
AoxI GGCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 3 cut(s) 17, 66, 217
BciT130I CCWGG 1 cut(s) 166
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 28, 228
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 192
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 231
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 136
BstF5I GGATG 2 cut(s) 28, 228
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 28, 228
BtsIMutI CAGTG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 150, 232
CviJI RGCY 5 cut(s) 76, 116, 156, 164, 229
CviKI_1 RGCY 5 cut(s) 76, 116, 156, 164, 229
CviQI GTAC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 153, 235
FaiI YATR 4 cut(s) 8, 119, 151, 233
FatI CATG 2 cut(s) 149, 231
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 35, 235
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 2 cut(s) 153, 235
HinfI GANTC 1 cut(s) 43
HphI GGTGA 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 29, 46, 196
HpyCH4III ACNGT 1 cut(s) 136
Hsp92II CATG 2 cut(s) 153, 235
LmnI GCTCC 2 cut(s) 153, 226
LpnPI CCDG 4 cut(s) 151, 173, 178, 199
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 12, 93
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
NlaIII CATG 2 cut(s) 153, 235
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 102, 118, 158, 207, 231
SgeI CNNG 5 cut(s) 162, 177, 178, 200, 226
Sse9I AATT 2 cut(s) 12, 93
SsiI CCGC 1 cut(s) 108
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 136
TasI AATT 2 cut(s) 12, 93
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.