Rroxscaffold_3G00241670

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
33864868 .. 33873962
9095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241670.1

Sequence Viewer

Length: 219 bp
ATGGAGCTGTTTGGCACGGGATTGGGATTTGTTGGTACCGGGACTTTTGAAGAAGGTTTTCAGCGGGGTTTAGATGGAGCTCATGGGTTGTTGATGGAATCGAGAGAAGATGATGAATCTGGGTTAGTGCACGTTCTTAGGAGGGAGTGGATGAGAAAAAAACTCCTATATTATCTAAGAACTATAACAGGTGCATCACAATTGTACGAGGCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.13

Weight (kDa)

5.24

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019011)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 64
AfaI GTAC 2 cut(s) 37, 206
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 2 cut(s) 7, 80
AluI AGCT 2 cut(s) 7, 80
Alw21I GWGCWC 2 cut(s) 82, 132
Alw44I GTGCAC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 57
Asp718I GGTACC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 132
BccI CCATC 2 cut(s) 68, 88
BcnI CCSGG 1 cut(s) 40
BfaI CTAG 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 82, 132
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 82, 132
BspACI CCGC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 137, 176
BstF5I GGATG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 156
Csp6I GTAC 2 cut(s) 36, 205
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 7, 80, 212
CviKI_1 RGCY 3 cut(s) 7, 80, 212
CviQI GTAC 2 cut(s) 36, 205
DdeI CTNAG 2 cut(s) 137, 176
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 84, 169, 185
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 57
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 82
FspBI CTAG 1 cut(s) 213
HapII CCGG 1 cut(s) 39
Hin1II CATG 1 cut(s) 86
HinfI GANTC 2 cut(s) 98, 116
HpaII CCGG 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 130, 194
HpyF3I CTNAG 2 cut(s) 137, 176
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 86
KpnI GGTACC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 4, 77
LpnPI CCDG 3 cut(s) 52, 105, 174
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 132
MboII GAAGA 2 cut(s) 62, 119
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 82, 132
MluCI AATT 1 cut(s) 200
MnlI CCTC 2 cut(s) 135, 202
MroXI GAANNNNTTC 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 200
NciI CCSGG 1 cut(s) 40
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 98, 116
Psp124BI GAGCTC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 2 cut(s) 37, 206
RsaNI GTAC 2 cut(s) 36, 205
SacI GAGCTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 82, 132
SetI ASST 5 cut(s) 9, 58, 82, 135, 193
SfaNI GCATC 1 cut(s) 203
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 98, 116
TspDTI ATGAA 1 cut(s) 129
VneI GTGCAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.