Rh7AG335900

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019011
Physical Location & Seq
Forward (+)
39034516 .. 39042275
7760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG335900.1

Sequence Viewer

Length: 348 bp
ATGGCGTCAATTCAGATGGAATTAGCAACAGCTCAGAGTTCTCAAGTGAAGGGGAGCTATGATGACTCCACCGCCATGTCAGTATTGCAGAAGGAAAATACAGCCCAAAAGAAAGCATTCATTGTTATTGGAATTAACACTGCTTTGAGTAGTAGGAAGCGGCGAGATTCAGTTAGAGAGACTTGGATGCCTCAAGCAGAGTTTAAAATGCGCGAGCTCTGCTTGGAAGCCTCGCTCAAATACTTGCAGTATATGCTTACAATTGAAAGGAAGATAGGTTGTTGGCTGGGATGGGACGTAGAAGCAGAGAGTACTGCAAGAGTAGCAATTATTAGCTTCTGCTGCTGA

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

8.38

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019011)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0439591 RchiOBHm_Chr5g0021871
rosa_multiflora Rmu_ssc0000189.1_g000032
rosa_roxburghii Rroxscaffold_3G00241670 Rroxscaffold_3G00250880
rosa_samantha Rh2AG425700 Rh7AG335900 Rh7CG353600 Rh7DG332100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 72, 160
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 4 cut(s) 32, 57, 217, 336
AluI AGCT 4 cut(s) 32, 57, 217, 336
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 10, 285
BcoDI GTCTC 1 cut(s) 173
BisI GCNGC 2 cut(s) 161, 343
BlsI GCNGC 2 cut(s) 162, 344
BmcAI AGTACT 1 cut(s) 313
BmsI GCATC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 27, 177
BsaHI GRCGYC 1 cut(s) 5
BseGI GGATG 2 cut(s) 192, 296
BseMII CTCAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 219
BspACI CCGC 2 cut(s) 72, 160
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 192, 296
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 4 cut(s) 219, 253, 323, 342
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 192, 296
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 215
CfoI GCGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 32, 57, 104, 217, 230, 286, 336
CviKI_1 RGCY 7 cut(s) 32, 57, 104, 217, 230, 286, 336
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 33
DraI TTTAAA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 60, 77, 252, 254
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 161, 343
FokI GGATG 2 cut(s) 199, 303
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 161, 343
GlaI GCGC 1 cut(s) 212
GluI GCNGC 2 cut(s) 161, 343
GsaI CCCAGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 2 cut(s) 65, 167
Hpy188I TCNGA 2 cut(s) 15, 36
HpyAV CCTTC 2 cut(s) 43, 85
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 88, 247, 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 253, 323, 342
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 1 cut(s) 272
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 177
MaeII ACGT 1 cut(s) 297
MboII GAAGA 1 cut(s) 283
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 5 cut(s) 9, 20, 132, 261, 327
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 201, 241
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 135, 204
MslI CAYNNNNRTG 1 cut(s) 74
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 116
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 219, 253, 323, 342
NlaIII CATG 1 cut(s) 79
PctI GAATGC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 162, 344
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 286
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 135, 204
SatI GCNGC 2 cut(s) 161, 343
ScaI AGTACT 1 cut(s) 313
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 34, 59, 219, 280, 300, 338
SfaNI GCATC 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 42, 192
SmoI CTYRAG 2 cut(s) 42, 192
Sse9I AATT 5 cut(s) 9, 20, 132, 261, 327
SsiI CCGC 2 cut(s) 72, 160
SstI GAGCTC 1 cut(s) 219
TaiI ACGT 1 cut(s) 300
TasI AATT 5 cut(s) 9, 20, 132, 261, 327
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 135, 204
Tru9I TTAA 2 cut(s) 135, 204
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.