Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020544

Physical Location & Seq

Genomic Coordinates Forward (+)

216924 .. 218981

Gene Structure 2058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGTTCTATCCTAAAGGAGACTTGCACACTCTTCGGCATAGGCAGCCAGGAAAGCATTTTTCTGAGCAAGCAGTAAAATTCTATGTTGCAGAGGTCCTGTTATCTCTGGAACACCTCCACATGCTTGGGATTGTCTATCGTGACCTTAAGCTAGAAAATGTCCTGGTGAGGGAAGATGGACATATAATGCTCTCTAATGTTGACCTCTCACTCCGTTGTGCTTTTAGTCCAACTCTTGTCAAGACCTCTTCAATGGAGTTTGGCCCCTTGCGTAAAAACCTTGTTTATTATGTTCAACCAGCTTGCATTGAGCCGCCTTCCTACATCCAACCATCATGTGTGGCTCCTACAACGTGCTTCTCAGTGCGTCTATTTTCTAGCAAGTCCAAAAAGGATAAAAAACCTAAAAACGAAACTGGTAACCAAGTAAGACCATTACCTGTGCTCATGGCAGAACTAACTGATGCTTGGTCTATGTCATTTGTTGGTACTCATGAGTATTTGGCACCTGAGATTATTAAGGGTGAAGGTCATGGAAGTGCTATTGATTGGTGGACTTTTGGAATCTTTTTGTATGAGTTGTTGTTTGGTAAGACTCCTTTCAAGGGTTATGGGAATCAAGCAACATTGTTCAATGTTATGGGTAAGCCCTTGCAGTTTCGAGAATCACTAGTTGTGAGTTTTGCCGCGAGAGACCTCATCAGGGGATTGCTTGTCAAGGAACCGCATAACAGATTTGCATACAAACGAGGGGCAACTGAGATAAAGCAGCACCCCTTTTTTGAAGGAGTGAATTGGGCATTGATACGTTGTGCAACCTCGCCTAAGATCCCAAAGCCTGTTGAGATTGAGCAGATACCTGTCCCGACAATGTCATCGAGTGAGAAGGAGAAGGCGCCTACCATAATGAAAGCAGCTCCTAATCAAAAGGGTTCCGATAATTACCTAGAATGTGATTTCTTTTTGCAATACTGGAAATGGTTTCTGATAAAAGATTTGTATGTTTGTTGTTATGTTTGTACCTGTCGATACTTTCAAAATTTAATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

351

Amino Acids

40.21

Weight (kDa)

8.86

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 71	1.9e-13	Protein kinase domain
Pkinase	PF00069	159 - 262	2.7e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000361
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002900 Rh5AG003000 Rh5BG004100 Rh5CG003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	508, 898
AccII	CGCG	1 cut(s)	692
AciI	CCGC	3 cut(s)	317, 690, 728
AclWI	GGATC	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	80, 1042
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	2 cut(s)	493, 1024
AfiI	CCNNNNNNNGG	3 cut(s)	172, 608, 706
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	255, 299, 607, 637, 788, 1040
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	49, 165
AluBI	AGCT	3 cut(s)	154, 305, 920
AluI	AGCT	3 cut(s)	154, 305, 920
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	15, 690
AlwI	GGATC	1 cut(s)	826
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	46, 772, 917
ApoI	RAATTY	2 cut(s)	80, 1042
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	2 cut(s)	97, 266
AsuHPI	GGTGA	2 cut(s)	181, 539
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	2 cut(s)	508, 898
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	58, 784, 929
BccI	CCATC	2 cut(s)	173, 343
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	2 cut(s)	51, 167
BcoDI	GTCTC	2 cut(s)	15, 690
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	4 cut(s)	155, 381, 674, 950
BfoI	RGCGCY	1 cut(s)	902
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	5 cut(s)	47, 317, 690, 773, 918
BlsI	GCNGC	5 cut(s)	48, 318, 691, 774, 919
Bme1390I	CCNGG	2 cut(s)	51, 167
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 266
BmiI	GGNNCC	6 cut(s)	268, 348, 510, 726, 900, 937
BmrFI	CCNGG	2 cut(s)	51, 167
BmsI	GCATC	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 608, 706
Bse1I	ACTGG	2 cut(s)	424, 980
BseBI	CCWGG	2 cut(s)	51, 167
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	172, 608, 706
BseMII	CTCAG	4 cut(s)	57, 378, 504, 753
BseNI	ACTGG	2 cut(s)	424, 980
BseXI	GCAGC	3 cut(s)	58, 784, 929
Bsh1236I	CGCG	1 cut(s)	692
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	2 cut(s)	508, 898
BsiHKAI	GWGCWC	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	851
BslI	CCNNNNNNNGG	3 cut(s)	172, 608, 706
BsmAI	GTCTC	2 cut(s)	15, 690
BsmFI	GGGAC	1 cut(s)	851
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	831
BspACI	CCGC	3 cut(s)	317, 690, 728
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	4 cut(s)	58, 377, 505, 754
BspFNI	CGCG	1 cut(s)	692
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	6 cut(s)	268, 348, 510, 726, 900, 937
BspPI	GGATC	1 cut(s)	826
BspT107I	GGYRCC	2 cut(s)	508, 898
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	424, 980
BssMI	GATC	1 cut(s)	831
BssNI	GRCGYC	1 cut(s)	899
Bst2UI	CCWGG	2 cut(s)	51, 167
Bst6I	CTCTTC	2 cut(s)	39, 256
BstACI	GRCGYC	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	72, 307
BstDEI	CTNAG	5 cut(s)	66, 364, 513, 762, 828
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	692
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	1 cut(s)	834
BstMAI	GTCTC	2 cut(s)	15, 690
BstMBI	GATC	1 cut(s)	831
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 55
BstNI	CCWGG	2 cut(s)	51, 167
BstNSI	RCATGY	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	49, 165
BstUI	CGCG	1 cut(s)	692
BstV1I	GCAGC	3 cut(s)	58, 784, 929
BstX2I	RGATCY	1 cut(s)	831
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	831
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	72, 307
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	2 cut(s)	97, 266
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	492, 1023
CviAII	CATG	6 cut(s)	124, 339, 451, 497, 536, 1053
CviJI	RGCY	9 cut(s)	49, 154, 267, 305, 316, 347, 652, 841, 920
CviKI_1	RGCY	9 cut(s)	49, 154, 267, 305, 316, 347, 652, 841, 920
CviQI	GTAC	2 cut(s)	492, 1023
DdeI	CTNAG	5 cut(s)	66, 364, 513, 762, 828
DinI	GGCGCC	1 cut(s)	900
DpnI	GATC	1 cut(s)	833
DpnII	GATC	1 cut(s)	831
Eam1104I	CTCTTC	2 cut(s)	39, 256
EarI	CTCTTC	2 cut(s)	39, 256
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	49, 165
EgeI	GGCGCC	1 cut(s)	900
EheI	GGCGCC	1 cut(s)	900
FaeI	CATG	6 cut(s)	127, 342, 454, 500, 539, 1056
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	6 cut(s)	123, 338, 450, 496, 535, 1052
Fnu4HI	GCNGC	5 cut(s)	47, 317, 690, 773, 918
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	47, 317, 690, 773, 918
FspBI	CTAG	4 cut(s)	155, 381, 674, 950
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	5 cut(s)	47, 317, 690, 773, 918
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	6 cut(s)	127, 342, 454, 500, 539, 1056
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	567, 598, 619, 668
HphI	GGTGA	2 cut(s)	181, 539
Hpy166II	GTNNAC	2 cut(s)	205, 558
Hpy188I	TCNGA	3 cut(s)	67, 940, 990
Hpy188III	TCNNGA	6 cut(s)	110, 143, 244, 497, 665, 868
Hpy8I	GTNNAC	2 cut(s)	205, 558
HpyAV	CCTTC	5 cut(s)	330, 524, 782, 883, 889
HpyCH4IV	ACGT	2 cut(s)	356, 811
HpyCH4V	TGCA	7 cut(s)	28, 92, 309, 658, 743, 818, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 55
HpyF3I	CTNAG	5 cut(s)	66, 364, 513, 762, 828
HpySE526I	ACGT	2 cut(s)	356, 811
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	6 cut(s)	127, 342, 454, 500, 539, 1056
HspAI	GCGC	1 cut(s)	899
KasI	GGCGCC	1 cut(s)	898
Kzo9I	GATC	1 cut(s)	831
LmnI	GCTCC	2 cut(s)	352, 925
Lsp1109I	GCAGC	3 cut(s)	58, 784, 929
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	4 cut(s)	155, 381, 674, 950
MaeII	ACGT	2 cut(s)	356, 811
MaeIII	GTNAC	2 cut(s)	143, 422
MalI	GATC	1 cut(s)	833
MboI	GATC	1 cut(s)	831
MboII	GAAGA	3 cut(s)	26, 188, 243
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	5 cut(s)	80, 796, 943, 1042, 1047
Mly113I	GGCGCC	1 cut(s)	899
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	257, 355
MnlI	CCTC	8 cut(s)	88, 128, 165, 218, 259, 710, 746, 832
MseI	TTAA	3 cut(s)	150, 522, 1046
MslI	CAYNNNNRTG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	51, 167
MvaI	CCWGG	2 cut(s)	51, 167
MvnI	CGCG	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	46, 55
NarI	GGCGCC	1 cut(s)	899
NdeII	GATC	1 cut(s)	831
NlaIII	CATG	6 cut(s)	127, 342, 454, 500, 539, 1056
NlaIV	GGNNCC	6 cut(s)	268, 348, 510, 726, 900, 937
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	127
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	567, 619, 668
PflFI	GACNNNGTC	1 cut(s)	874
PkrI	GCNGC	5 cut(s)	48, 318, 691, 774, 919
PleI	GAGTC	1 cut(s)	592
PluTI	GGCGCC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	592
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	49, 165
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	49, 165
PspN4I	GGNNCC	6 cut(s)	268, 348, 510, 726, 900, 937
PspPI	GGNCC	2 cut(s)	97, 266
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	831
PsyI	GACNNNGTC	1 cut(s)	874
RsaI	GTAC	2 cut(s)	493, 1024
RsaNI	GTAC	2 cut(s)	492, 1023
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	150, 522, 1046
SatI	GCNGC	5 cut(s)	47, 317, 690, 773, 918
Sau3AI	GATC	1 cut(s)	831
Sau96I	GGNCC	2 cut(s)	97, 266
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	51, 167
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	900
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	673
Sse9I	AATT	5 cut(s)	80, 796, 943, 1042, 1047
SsiI	CCGC	3 cut(s)	317, 690, 728
SspDI	GGCGCC	1 cut(s)	898
SspMI	CTAG	4 cut(s)	155, 381, 674, 950
StyD4I	CCNGG	2 cut(s)	49, 165
TaiI	ACGT	2 cut(s)	359, 814
TaqI	TCGA	3 cut(s)	664, 881, 1030
TasI	AATT	5 cut(s)	80, 796, 943, 1042, 1047
TauI	GCSGC	2 cut(s)	319, 692
TfiI	GAWTC	3 cut(s)	567, 619, 668
Tru1I	TTAA	3 cut(s)	150, 522, 1046
Tru9I	TTAA	3 cut(s)	150, 522, 1046
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	3 cut(s)	46, 772, 917
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	926
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	372
Tth111I	GACNNNGTC	1 cut(s)	874
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	80, 1042
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	4 cut(s)	155, 381, 674, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.