Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020544

Physical Location & Seq

Genomic Coordinates Forward (+)

355309 .. 357155

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGTTTTGTCCTGGAGGAGACTTGCACACTCTTCGGCAGAGGCAACCAGGAAAGCATTTTTCTGAGCAGGCGGTAAAATTCTATGTTGCAGAGGTCCTGTTATCTCTGGAATACCTCCACATGCTTGGGATTGTCTATCGTGACCTTAAGCCAGAAAATGTCCTGGTGAGGGAAGATGGACATATAATGCTATTTGATTTTGACCTCTCACTCCGTTGTGCTTTTAGTCCAACTCTTGTCAAGATCTCTTCAACGGAGTTTGAGCCCTTGCATAAAAACCCTGTTTATTGTGTTCAACCAGCTTGCATTGAGCCGCCTTCCTGCATCCAACCATCCTGTGTGGCTCCTACAACGTGCTTCTCACCGCGTCTATTTTCTAGCAAGTCCAAAAAGGATAAAAAACCTAAAAACGAAACTGGTAACCAAGTAAGACCATTACCTGAGCTCATGGCAGAACCAACTGATGCCCGGTCTATGTCATTTGTTGGGACTCATGAGAATTTGGCACATGAGATTATTAAGGGTGAAGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGAATCTTTTTGTATGAGCTGTTGTTTGTTGTGAGTTTTGCTGCGAGAGACCTCATCAGGGGATTGCTTGTCAAGGAACCGCAGAACAGATTGGCATACAAACGAGGGGCAATTGAGATAAAGCAACACCCCTTTTTTGAAGGAGTGAATTGGGCATTGATACGTTGTGCAACCCCGCCTGAGATCCCAAAGCCTGTTGAGATTGAGCAGATATCTGTCCCGACAATGTCATCGAGTGAGAAGGAGAAGGCGCCTACCATAATGAAAGCAGCTCCTGATCAAAAGGGTTTCAATAATTACCTAGAATTTGATTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

33.3

Weight (kDa)

6.32

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 74	6.4e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 73	3.1e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	159 - 197	1.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000361
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002900 Rh5AG003000 Rh5BG004100 Rh5CG003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AccII	CGCG	1 cut(s)	370
AciI	CCGC	5 cut(s)	74, 317, 368, 644, 740
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	3 cut(s)	80, 502, 869
AcyI	GRCGYC	1 cut(s)	815
AfiI	CCNNNNNNNGG	2 cut(s)	172, 622
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	255, 299, 704, 856
AjnI	CCWGG	3 cut(s)	13, 49, 165
AluBI	AGCT	4 cut(s)	305, 448, 583, 836
AluI	AGCT	4 cut(s)	305, 448, 583, 836
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	15, 606
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	839
ApeKI	GCWGC	2 cut(s)	605, 833
ApoI	RAATTY	3 cut(s)	80, 502, 869
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	181, 357, 539
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	814
BanII	GRGCYC	2 cut(s)	270, 450
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	592, 845
BccI	CCATC	2 cut(s)	173, 343
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	3 cut(s)	15, 51, 167
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	15, 606
BfaI	CTAG	2 cut(s)	381, 866
BfoI	RGCGCY	1 cut(s)	818
BfrI	CTTAAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	3 cut(s)	317, 606, 834
BlsI	GCNGC	3 cut(s)	318, 607, 835
Bme1390I	CCNGG	4 cut(s)	15, 51, 167, 472
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	348, 642, 816
BmrFI	CCNGG	4 cut(s)	15, 51, 167, 472
BmsI	GCATC	2 cut(s)	336, 457
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 622
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	3 cut(s)	15, 51, 167
BseGI	GGATG	2 cut(s)	327, 335
BseLI	CCNNNNNNNGG	2 cut(s)	172, 622
BseMII	CTCAG	3 cut(s)	57, 435, 735
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	592, 845
Bsh1236I	CGCG	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	505, 767
BslI	CCNNNNNNNGG	2 cut(s)	172, 622
BsmAI	GTCTC	2 cut(s)	15, 606
BsmFI	GGGAC	2 cut(s)	505, 767
Bso31I	GGTCTC	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	270, 450
Bsp143I	GATC	3 cut(s)	246, 747, 841
BspACI	CCGC	5 cut(s)	74, 317, 368, 644, 740
BspCNI	CTCAG	3 cut(s)	58, 436, 736
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	348, 642, 816
BspPI	GGATC	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	246, 747, 841
BssNI	GRCGYC	1 cut(s)	815
Bst2UI	CCWGG	3 cut(s)	15, 51, 167
Bst6I	CTCTTC	2 cut(s)	39, 256
BstACI	GRCGYC	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	72, 307
BstDEI	CTNAG	3 cut(s)	66, 444, 744
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	327, 335
BstFNI	CGCG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	3 cut(s)	249, 750, 844
BstMAI	GTCTC	2 cut(s)	15, 606
BstMBI	GATC	3 cut(s)	246, 747, 841
BstNI	CCWGG	3 cut(s)	15, 51, 167
BstNSI	RCATGY	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	13, 49, 165, 470
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	592, 845
BstX2I	RGATCY	2 cut(s)	246, 747
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	2 cut(s)	246, 747
BtsCI	GGATG	2 cut(s)	327, 335
Cac8I	GCNNGC	2 cut(s)	72, 307
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	1 cut(s)	359
CviAII	CATG	5 cut(s)	124, 451, 497, 512, 536
CviJI	RGCY	9 cut(s)	154, 268, 305, 316, 347, 448, 583, 757, 836
CviKI_1	RGCY	9 cut(s)	154, 268, 305, 316, 347, 448, 583, 757, 836
DdeI	CTNAG	3 cut(s)	66, 444, 744
DinI	GGCGCC	1 cut(s)	816
DpnI	GATC	3 cut(s)	248, 749, 843
DpnII	GATC	3 cut(s)	246, 747, 841
Eam1104I	CTCTTC	2 cut(s)	39, 256
EarI	CTCTTC	2 cut(s)	39, 256
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	270, 450
Eco31I	GGTCTC	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	13, 49, 165
EcoRV	GATATC	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	270, 450
EgeI	GGCGCC	1 cut(s)	816
EheI	GGCGCC	1 cut(s)	816
FaeI	CATG	5 cut(s)	127, 454, 500, 515, 539
FaqI	GGGAC	2 cut(s)	505, 767
FatI	CATG	5 cut(s)	123, 450, 496, 511, 535
FauI	CCCGC	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	3 cut(s)	317, 606, 834
FokI	GGATG	2 cut(s)	314, 322
FriOI	GRGCYC	2 cut(s)	270, 450
Fsp4HI	GCNGC	3 cut(s)	317, 606, 834
FspBI	CTAG	2 cut(s)	381, 866
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	3 cut(s)	317, 606, 834
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	818
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	5 cut(s)	127, 454, 500, 515, 539
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HinfI	GANTC	2 cut(s)	493, 567
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	3 cut(s)	181, 357, 539
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	6 cut(s)	110, 143, 244, 497, 784, 839
Hpy8I	GTNNAC	1 cut(s)	558
HpyAV	CCTTC	5 cut(s)	330, 524, 698, 799, 805
HpyCH4IV	ACGT	2 cut(s)	356, 727
HpyCH4V	TGCA	6 cut(s)	28, 92, 274, 309, 327, 734
HpyF3I	CTNAG	3 cut(s)	66, 444, 744
HpySE526I	ACGT	2 cut(s)	356, 727
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	5 cut(s)	127, 454, 500, 515, 539
HspAI	GCGC	1 cut(s)	815
KasI	GGCGCC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	3 cut(s)	246, 747, 841
LmnI	GCTCC	2 cut(s)	352, 841
Lsp1109I	GCAGC	2 cut(s)	592, 845
LweI	GCATC	2 cut(s)	336, 457
MaeI	CTAG	2 cut(s)	381, 866
MaeII	ACGT	2 cut(s)	356, 727
MaeIII	GTNAC	2 cut(s)	143, 422
MalI	GATC	3 cut(s)	248, 749, 843
MboI	GATC	3 cut(s)	246, 747, 841
MboII	GAAGA	3 cut(s)	26, 188, 243
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	246, 747
MhlI	GDGCHC	2 cut(s)	270, 450
MluCI	AATT	6 cut(s)	80, 502, 675, 712, 859, 869
Mly113I	GGCGCC	1 cut(s)	815
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	257, 355
MnlI	CCTC	8 cut(s)	11, 36, 88, 128, 165, 218, 626, 662
MseI	TTAA	2 cut(s)	150, 522
MslI	CAYNNNNRTG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	4 cut(s)	15, 51, 167, 472
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	3 cut(s)	15, 51, 167
MvnI	CGCG	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	815
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	3 cut(s)	246, 747, 841
NlaIII	CATG	5 cut(s)	127, 454, 500, 515, 539
NlaIV	GGNNCC	3 cut(s)	348, 642, 816
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	127
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	790
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	318, 607, 835
PleI	GAGTC	1 cut(s)	487
PluTI	GGCGCC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	3 cut(s)	13, 49, 165
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	13, 49, 165
PspN4I	GGNNCC	3 cut(s)	348, 642, 816
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	2 cut(s)	246, 747
PsyI	GACNNNGTC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	540
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	150, 522
SatI	GCNGC	3 cut(s)	317, 606, 834
Sau3AI	GATC	3 cut(s)	246, 747, 841
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	4 cut(s)	15, 51, 167, 472
SduI	GDGCHC	2 cut(s)	270, 450
SfaNI	GCATC	2 cut(s)	336, 457
SfoI	GGCGCC	1 cut(s)	816
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	6 cut(s)	80, 502, 675, 712, 859, 869
SsiI	CCGC	5 cut(s)	74, 317, 368, 644, 740
SspDI	GGCGCC	1 cut(s)	814
SspMI	CTAG	2 cut(s)	381, 866
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	13, 49, 165, 470
TaiI	ACGT	2 cut(s)	359, 730
TaqI	TCGA	1 cut(s)	797
TasI	AATT	6 cut(s)	80, 502, 675, 712, 859, 869
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	150, 522
Tru9I	TTAA	2 cut(s)	150, 522
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	605, 833
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	842
TspGWI	ACGGA	2 cut(s)	206, 272
Tth111I	GACNNNGTC	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	3 cut(s)	80, 502, 869
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	2 cut(s)	381, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.