Rh5AG002900

Protein kinase G11A-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
228693 .. 230223
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG002900.1

Sequence Viewer

Length: 666 bp
ATGGAGTTCTGTCCTAAAGGAGACTTGCACACTCTTCGGCATAGGCAGCCAGGAAAGCATTTTTCTGAGCAAGCAGTAAAATTCTATGTTGCAGAGGTCCTGTTATCTCTGGAATACCTCCACATGCTTGGGATTGTCTATCGTGACCTTAAGCCAGAAAATGTCCTGGTGAGGGAAGATGGACATATAATGCTCTCTAATGTTGACCTCTCACTCCATTGTGCTTTTAGTCCAACTCTTGTCAAGACCTCTTCAATGGAGTTTGGCCCCTTGCGTAAAAACCTTGTTTATTATGTTCAACCAGCTTGCATTGAGCCGCCTTCCTACATCCAACCATCCTGTGTGGCTCCTACAACGTGCTTCTCAGTGCGTCTATTTTCTAGCAAGTCCAAAAAGGATAAAAAACCTAAAAACGAAACTGGTAACCAAGTAAGACCATTACCTGTGCTCATGGCAGAACTAACTGATGCCCGGTCTATGTCATTTGTTGGTACTCATGAGTATTTGGCACCTGAGATTATTAAGGGTGAAGGTCATGGAAGTGCTATTGATTGGTGGACTTTTGGAATCTTTTTGTATGAGTTGTTGTTTGGTAAGACTCCTTTCAAGGGTTATGGGAATCAAGCAACATTGTTCAATGTTATGGGTCAGCCCTTGCAGTTTTGA

Protein Analysis

221

Amino Acids

25.01

Weight (kDa)

8.22

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 71 5.8e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 74 1.4e-06 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 159 - 211 2.8e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020544)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0000361
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG002900 Rh5AG003000 Rh5BG004100 Rh5CG003200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 2 cut(s) 172, 608
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 4 cut(s) 255, 299, 607, 637
AjnI CCWGG 2 cut(s) 49, 165
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 97, 266
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 181, 539
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 508
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 173, 343
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 2 cut(s) 51, 167
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 47, 317
BlsI GCNGC 2 cut(s) 48, 318
Bme1390I CCNGG 3 cut(s) 51, 167, 472
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 97, 266
BmiI GGNNCC 3 cut(s) 268, 348, 510
BmrFI CCNGG 3 cut(s) 51, 167, 472
BmsI GCATC 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 608
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 51, 167
BseGI GGATG 2 cut(s) 327, 335
BseLI CCNNNNNNNGG 2 cut(s) 172, 608
BseMII CTCAG 3 cut(s) 57, 378, 504
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 172, 608
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 450
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 3 cut(s) 58, 377, 505
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 268, 348, 510
BspT107I GGYRCC 1 cut(s) 508
BspTI CTTAAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 51, 167
Bst6I CTCTTC 2 cut(s) 39, 256
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 72, 307
BstDEI CTNAG 3 cut(s) 66, 364, 513
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 2 cut(s) 327, 335
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 46, 55
BstNI CCWGG 2 cut(s) 51, 167
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 49, 165, 470
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 327, 335
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 72, 307
CciI TCATGA 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 97, 266
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 492
CviAII CATG 4 cut(s) 124, 451, 497, 536
CviJI RGCY 7 cut(s) 49, 154, 267, 305, 316, 347, 652
CviKI_1 RGCY 7 cut(s) 49, 154, 267, 305, 316, 347, 652
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 3 cut(s) 66, 364, 513
Eam1104I CTCTTC 2 cut(s) 39, 256
EarI CTCTTC 2 cut(s) 39, 256
Eco47I GGWCC 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 49, 165
FaeI CATG 4 cut(s) 127, 454, 500, 539
FatI CATG 4 cut(s) 123, 450, 496, 535
Fnu4HI GCNGC 2 cut(s) 47, 317
FokI GGATG 2 cut(s) 314, 322
Fsp4HI GCNGC 2 cut(s) 47, 317
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 47, 317
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 472
HgaI GACGC 1 cut(s) 359
Hin1II CATG 4 cut(s) 127, 454, 500, 539
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 567, 598, 619
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 181, 539
Hpy166II GTNNAC 2 cut(s) 205, 558
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 4 cut(s) 110, 143, 244, 497
Hpy8I GTNNAC 2 cut(s) 205, 558
HpyAV CCTTC 2 cut(s) 330, 524
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 4 cut(s) 28, 92, 309, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 55
HpyF3I CTNAG 3 cut(s) 66, 364, 513
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 4 cut(s) 127, 454, 500, 539
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 143, 422
MboII GAAGA 3 cut(s) 26, 188, 243
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 2 cut(s) 257, 355
MnlI CCTC 5 cut(s) 88, 128, 165, 218, 259
MseI TTAA 2 cut(s) 150, 522
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 3 cut(s) 51, 167, 472
MvaI CCWGG 2 cut(s) 51, 167
MwoI GCNNNNNNNGC 2 cut(s) 46, 55
NciI CCSGG 1 cut(s) 472
NlaIII CATG 4 cut(s) 127, 454, 500, 539
NlaIV GGNNCC 3 cut(s) 268, 348, 510
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 127
PagI TCATGA 1 cut(s) 496
PfeI GAWTC 2 cut(s) 567, 619
PkrI GCNGC 2 cut(s) 48, 318
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 49, 165
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 49, 165
PspN4I GGNNCC 3 cut(s) 268, 348, 510
PspPI GGNCC 2 cut(s) 97, 266
PspPPI RGGWCCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 2 cut(s) 150, 522
SatI GCNGC 2 cut(s) 47, 317
Sau96I GGNCC 2 cut(s) 97, 266
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 51, 167, 472
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 49, 165, 470
TaiI ACGT 1 cut(s) 359
TasI AATT 1 cut(s) 80
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 2 cut(s) 567, 619
Tru1I TTAA 2 cut(s) 150, 522
Tru9I TTAA 2 cut(s) 150, 522
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.