Rorug04G0383300

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001306
Physical Location & Seq
Forward (+)
55401388 .. 55406684
5297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0383300.1

Sequence Viewer

Length: 1515 bp
ATGGAGCCTTGGAGTTTCGGTTCAGAAGGGAAAGGGTTTTTACTTGCTGATGAGATGGATATACCAATTGATGCATTTGCAAGGAGTACAAAAGCATTCCTAGAATGGGATAACAAAACTTGCTTTAATTTCGATAAAGAATCAGTTGAGAGCATGGAGTTCATGGATTTGGGATTGCCTGATACAGTGAGGGAGCCTTGTCATGGTAACCAAGTAGTGGATGTCTTGAGTGGTGTCGCTGGTGTGGGCTGTAATGATTCTAGTAACAATACCGTAGCTTCTCCTACTTGTTTGATGACTTCAAGTTCATCTTGGGGTGAAGGAGAATCTGGCTCCAAATTTTCGAGTCCAGTCTGTGAGTCTAGTAGCCAGGATTCATCACTTATTGCTTTGAAGCTAGGGAGGTTGGCTGATAGCAAATATGGACAGGATAGTCAACATCTGAAAGAGAGGTCAAAGAGAGCTCGCACAAAGGGTCCACACTATCAGACTCTCACCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCTTCAAAGGAGTACCATAAGAGGCATAGAGTTTGTGATGCTCACTCAAAGACTGCAATAGTTATCGTTAATGGCATTGAACAGAGGTTTTGTCAACAATGTAGCAGGTTTCATCTGCTGGCTGAATTTGATGATGTTAAGCGCAGTTGTCGTAGACGCTTAGCTGGCCACAATCAACGCCGCAGGAAGCCTCAACTAGATACTTTTGATTGTAAATCGCGTAAGTGGCTTCAGTCATATCAAGGCATTGGATATCTTGGAACTTCCTTGCCAAAGAGAACACCATTTGTCTTTTCAGATATACTTCCAGGTGGCATTCTATATCCAGAAGAATCTAACGAGTATGGACATATTAAAACTGAAGATGAATCAACTTACAGTCAATGTGTGACACCCATAACAAACAGGCTATTACCTCCAAACTCTTTCCTCCAACTGCATGGCCTCGGGAAGCAACATGCTTCAGAAGTTTCTTTGTCAGGAAGTGAATTCTCGGTTTTTGATACTGCATCACATGTCCAGAAAGCATCTGGGGCGTCAACCTACCAGGGTGCTCTCTCTCTTCTGTCAGCTCAATCACAGAGCTCAATCCATTCAGCAAGAAATCAAGTGGCTACCCCTCTGCAAATACAGAGAATCCATCATGGTGCTGGTCAAATTAATGAACGGCCTTCCACAGTAAAAGCCTTGGAAAAATATGGACGAAACAGGTCCTTCCCATGCAGGATAAACTCCATGGGAGCTGACCAGATGGACTCAGTAATGATTTCTGATTCTAGTCATGCTGTTGACTTCCAACTTCACACAGATAGGGTTTTCCAGGAGTCAGCTCGCTTCAGTCACAAGTATCATCTTTCTCCTGAAAATGGACCAACTTTTGATTTGCTCCAATTGTCTTCACATTTTCAAAGAGTGGAGCAAGAGAGAAACTTTTTGCAAGTCAAACATGAGCAGGGGGATTTCTACTGTTTCCCGCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

504

Amino Acids

56.36

Weight (kDa)

6.89

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 167 - 240 8.6e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 506
AasI GACNNNNNNGTC 1 cut(s) 432
Acc36I ACCTGC 2 cut(s) 506, 627
AccB7I CCANNNNNTGG 1 cut(s) 217
AccI GTMKAC 1 cut(s) 685
AccII CGCG 1 cut(s) 751
AciI CCGC 2 cut(s) 712, 1505
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 3 cut(s) 338, 656, 1019
AcuI CTGAAG 4 cut(s) 746, 912, 978, 1351
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 2 cut(s) 88, 545
AfiI CCNNNNNNNGG 4 cut(s) 106, 203, 217, 1397
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 5 cut(s) 303, 394, 537, 611, 1439
AjnI CCWGG 4 cut(s) 369, 838, 1077, 1350
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 9 cut(s) 278, 397, 464, 531, 695, 1103, 1116, 1274, 1361
AluI AGCT 9 cut(s) 278, 397, 464, 531, 695, 1103, 1116, 1274, 1361
Alw21I GWGCWC 3 cut(s) 466, 1087, 1118
AlwI GGATC 1 cut(s) 531
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 3 cut(s) 697, 973, 1199
ApoI RAATTY 3 cut(s) 338, 656, 1019
AseI ATTAAT 1 cut(s) 1191
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 476, 1242, 1400
AsuHPI GGTGA 2 cut(s) 329, 487
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 3 cut(s) 476, 1242, 1400
BalI TGGCCA 1 cut(s) 699
BanII GRGCYC 2 cut(s) 466, 1118
BbsI GAAGAC 1 cut(s) 1419
Bbv12I GWGCWC 3 cut(s) 466, 1087, 1118
BccI CCATC 3 cut(s) 49, 1179, 1276
BceAI ACGGC 1 cut(s) 1214
BciT130I CCWGG 4 cut(s) 371, 840, 1079, 1352
BfaI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
BfuAI ACCTGC 2 cut(s) 506, 627
BisI GCNGC 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 691
BlsI GCNGC 1 cut(s) 713
Bme1390I CCNGG 4 cut(s) 371, 840, 1079, 1352
Bme18I GGWCC 3 cut(s) 476, 1242, 1400
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 3 cut(s) 476, 1242, 1400
BmiI GGNNCC 4 cut(s) 6, 195, 334, 477
BmrFI CCNGG 4 cut(s) 371, 840, 1079, 1352
BmsI GCATC 4 cut(s) 61, 559, 1049, 1067
BpiI GAAGAC 1 cut(s) 1419
Bpu1102I GCTNAGC 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 203, 217, 1397
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 4 cut(s) 371, 840, 1079, 1352
BseDI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 4 cut(s) 106, 203, 217, 1397
BseMII CTCAG 1 cut(s) 1302
BseNI ACTGG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 751
BshFI GGCC 3 cut(s) 699, 975, 1201
BsiHKAI GWGCWC 3 cut(s) 466, 1087, 1118
BsiHKCI CYCGRG 1 cut(s) 977
BslI CCNNNNNNNGG 4 cut(s) 106, 203, 217, 1397
BsmI GAATGC 2 cut(s) 95, 846
BsnI GGCC 3 cut(s) 699, 975, 1201
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 466, 1087, 1118
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 691
Bsp19I CCATGG 1 cut(s) 1266
BspACI CCGC 2 cut(s) 712, 1505
BspANI GGCC 3 cut(s) 699, 975, 1201
BspCNI CTCAG 1 cut(s) 1301
BspFNI CGCG 1 cut(s) 751
BspLI GGNNCC 4 cut(s) 6, 195, 334, 477
BspMI ACCTGC 2 cut(s) 506, 627
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 538
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 3 cut(s) 8, 1218, 1266
Bst2UI CCWGG 4 cut(s) 371, 840, 1079, 1352
Bst4CI ACNGT 5 cut(s) 187, 274, 911, 1210, 1499
Bst6I CTCTTC 2 cut(s) 538, 1098
BstACI GRCGYC 1 cut(s) 1067
BstC8I GCNNGC 4 cut(s) 466, 651, 697, 1363
BstDEI CTNAG 3 cut(s) 527, 691, 1288
BstDSI CCRYGG 1 cut(s) 1266
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 751
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 1 cut(s) 526
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
BstNI CCWGG 4 cut(s) 371, 840, 1079, 1352
BstNSI RCATGY 2 cut(s) 992, 1049
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 4 cut(s) 369, 838, 1077, 1350
BstUI CGCG 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 1419
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 2 cut(s) 509, 971
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 699, 975, 1201
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 2 cut(s) 506, 627
Cac8I GCNNGC 4 cut(s) 466, 651, 697, 1363
CfoI GCGC 1 cut(s) 675
Cfr13I GGNCC 3 cut(s) 476, 1242, 1400
CseI GACGC 2 cut(s) 696, 1056
Csp6I GTAC 2 cut(s) 87, 544
CviQI GTAC 2 cut(s) 87, 544
DdeI CTNAG 3 cut(s) 527, 691, 1288
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 432
DseDI GACNNNNNNGTC 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 538, 1098
EarI CTCTTC 2 cut(s) 538, 1098
Ecl136II GAGCTC 2 cut(s) 464, 1116
Eco130I CCWWGG 3 cut(s) 8, 1218, 1266
Eco24I GRGCYC 2 cut(s) 466, 1118
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 3 cut(s) 476, 1242, 1400
Eco53kI GAGCTC 2 cut(s) 464, 1116
Eco57I CTGAAG 4 cut(s) 746, 912, 978, 1351
Eco88I CYCGRG 1 cut(s) 977
Eco91I GGTNACC 1 cut(s) 206
EcoICRI GAGCTC 2 cut(s) 464, 1116
EcoO109I RGGNCCY 1 cut(s) 1242
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 4 cut(s) 369, 838, 1077, 1350
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 3 cut(s) 8, 1218, 1266
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 2 cut(s) 466, 1118
ErhI CCWWGG 3 cut(s) 8, 1218, 1266
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FauI CCCGC 1 cut(s) 1512
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 712
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 466, 1118
Fsp4HI GCNGC 1 cut(s) 712
FspBI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
GlaI GCGC 1 cut(s) 674
GluI GCNGC 1 cut(s) 712
HaeIII GGCC 3 cut(s) 699, 975, 1201
HgaI GACGC 2 cut(s) 696, 1056
HhaI GCGC 1 cut(s) 675
Hin1I GRCGYC 1 cut(s) 1067
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 4 cut(s) 437, 626, 1071, 1321
HindII GTYRAC 4 cut(s) 437, 626, 1071, 1321
HphI GGTGA 2 cut(s) 329, 487
Hpy166II GTNNAC 6 cut(s) 437, 479, 626, 686, 1071, 1321
Hpy188I TCNGA 6 cut(s) 25, 444, 489, 829, 997, 1303
Hpy188III TCNNGA 6 cut(s) 226, 857, 979, 1011, 1051, 1391
Hpy8I GTNNAC 6 cut(s) 437, 479, 626, 686, 1071, 1321
HpyAV CCTTC 4 cut(s) 20, 314, 1212, 1255
HpyCH4III ACNGT 5 cut(s) 187, 274, 911, 1210, 1499
HpyCH4V TGCA 8 cut(s) 74, 80, 587, 970, 1040, 1156, 1254, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
HpyF3I CTNAG 3 cut(s) 527, 691, 1288
Hsp92I GRCGYC 1 cut(s) 1067
HspAI GCGC 1 cut(s) 673
Kzo9I GATC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 6 cut(s) 4, 193, 338, 1271, 1422, 1447
LweI GCATC 4 cut(s) 61, 559, 1049, 1067
MaeI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
MaeIII GTNAC 5 cut(s) 206, 263, 515, 919, 1370
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 5 cut(s) 525, 872, 905, 1085, 1419
MfeI CAATTG 2 cut(s) 66, 1421
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 466, 1087, 1118
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 5 cut(s) 355, 368, 484, 1280, 1364
MmeI TCCRAC 2 cut(s) 988, 1351
Mox20I TGGCCA 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 76
MscI TGGCCA 1 cut(s) 699
MseI TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
MslI CAYNNNNRTG 1 cut(s) 1176
Msp20I TGGCCA 1 cut(s) 699
MspR9I CCNGG 4 cut(s) 371, 840, 1079, 1352
MunI CAATTG 2 cut(s) 66, 1421
Mva1269I GAATGC 2 cut(s) 95, 846
MvaI CCWGG 4 cut(s) 371, 840, 1079, 1352
MvnI CGCG 1 cut(s) 751
MwoI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
NcoI CCATGG 1 cut(s) 1266
NdeII GATC 1 cut(s) 523
NlaIV GGNNCC 4 cut(s) 6, 195, 334, 477
NmuCI GTSAC 2 cut(s) 919, 1370
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 992, 1049
PaqCI CACCTGC 1 cut(s) 506
PciI ACATGT 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 538
PctI GAATGC 2 cut(s) 95, 846
PfeI GAWTC 8 cut(s) 140, 257, 326, 374, 863, 899, 1167, 1304
PflMI CCANNNNNTGG 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 1350
PkrI GCNGC 1 cut(s) 713
PleI GAGTC 5 cut(s) 354, 367, 484, 1280, 1363
PpsI GAGTC 5 cut(s) 354, 367, 484, 1280, 1363
PpuMI RGGWCCY 1 cut(s) 1242
PscI ACATGT 1 cut(s) 1045
PshBI ATTAAT 1 cut(s) 1191
Psp124BI GAGCTC 2 cut(s) 466, 1118
Psp5II RGGWCCY 1 cut(s) 1242
Psp6I CCWGG 4 cut(s) 369, 838, 1077, 1350
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 4 cut(s) 369, 838, 1077, 1350
PspN4I GGNNCC 4 cut(s) 6, 195, 334, 477
PspPI GGNCC 3 cut(s) 476, 1242, 1400
PspPPI RGGWCCY 1 cut(s) 1242
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 2 cut(s) 88, 545
RsaNI GTAC 2 cut(s) 87, 544
RseI CAYNNNNRTG 1 cut(s) 1176
SacI GAGCTC 2 cut(s) 466, 1118
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
SatI GCNGC 1 cut(s) 712
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 3 cut(s) 476, 1242, 1400
SchI GAGTC 5 cut(s) 355, 368, 484, 1280, 1364
ScrFI CCNGG 4 cut(s) 371, 840, 1079, 1352
SduI GDGCHC 3 cut(s) 466, 1087, 1118
SfaNI GCATC 4 cut(s) 61, 559, 1049, 1067
SinI GGWCC 3 cut(s) 476, 1242, 1400
SmiMI CAYNNNNRTG 1 cut(s) 1176
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
SsiI CCGC 2 cut(s) 712, 1505
SspMI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
SstI GAGCTC 2 cut(s) 466, 1118
StyD4I CCNGG 4 cut(s) 369, 838, 1077, 1350
StyI CCWWGG 3 cut(s) 8, 1218, 1266
TaaI ACNGT 5 cut(s) 187, 274, 911, 1210, 1499
TaqI TCGA 2 cut(s) 132, 344
TasI AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 8 cut(s) 140, 257, 326, 374, 863, 899, 1167, 1304
Tru1I TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
Tru9I TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 2 cut(s) 919, 1370
Tsp45I GTSAC 2 cut(s) 919, 1370
TspDTI ATGAA 7 cut(s) 151, 297, 366, 497, 632, 912, 1209
TspRI CASTG 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 3 cut(s) 476, 1242, 1400
VspI ATTAAT 1 cut(s) 1191
XapI RAATTY 3 cut(s) 338, 656, 1019
XceI RCATGY 2 cut(s) 992, 1049
XcmI CCANNNNNNNNNTGG 2 cut(s) 1058, 1178
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.