Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001306

Physical Location & Seq

Genomic Coordinates Forward (+)

238243 .. 239127

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTGCAGAGGTCCTGTTATCTCTGGAATACCTCCACATGCTTGGGATTGTCTATCGTGACCCTTAAGCCAGAAAATGTCCTGGTAAGGGAAGATGGACACATAATGCTCTCTGATTTTGACCTCTCACTCCGTTGCGCTTTTAGTCCAACTCTTGTCAAGACCTCTTCAATGGAGTTTGAGCCCTTGCGTAAAAACCCTGTTTATTGTGTTCAACCAGCTTGCATTGAGCCGCCTTCCTGCATCCAACCATCATGTGTAGCTCCTACAACGTGCTTTTCACCGCGTCTATTTTCTAGCAAGTCCAAAAAGGATAAAAAACCTAAAAACGAAACTGGTAACCAAGTAAGACCATTACCTGAGCTCATGGCAGAACCAACTTATGCCCGTTCTATGTCATTTGTTGGGACTCATGAGTATTTGGCACCCGAGATTATTAAGGGTGAAGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGAGTCTTTTTGTATGAGCTGTTGGTTGGCAAGACTCCTTTCAAGGGTTCTGGGAATCGAGCAACATTGTTCAATGTTGTGGGTCAGCCCTTGCGGTTTCCAGAATCACCAATTGTGAGTTTTGCCGCGAGAGACCTCATCAGGGGATTGCTTGTCAAGGAACCGCAGAACAGATTGGCATACAAACGAGGGGCAACTGAGATAAAGCAACACCCCTTTTTTGAAGGAGTGAATTGGGCATTGATACGTTGTGCAACCCCGCCTGAGATCCCAAAGCCTGTTGAGATTGAGCAGATACCTGTCCCGACAATGTCATTGAGTGAGAAGGAGAAGGCGCCTACCATAATGAAAGCAGCTCCTGATCAAAAGGGTTCCGATAATTACCTAGAATTTGATTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

32.9

Weight (kDa)

8.31

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	129 - 222	5.3e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	131 - 234	1.4e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26610 AT5G47750 AT5G55910 AT5G55910
fragaria_vesca	FvH4_3g00260 FvH4_3g42710 FvH4_3g42710 FvH4_3g42710 FvH4_3g42710 FvH4_3g42710 FvH4_3g42710
malus_domestica	MD03G1029500.v1.1 MD09G1025300.v1.1 MD10G1339900.v1.1 MD11G1032900.v1.1
prunus_persica	Prupe.4G002900_v2.0.a1 Prupe.4G002900_v2.0.a1 Prupe.6G025600_v2.0.a1 Prupe.6G025600_v2.0.a1 Prupe.6G025600_v2.0.a1 Prupe.6G025600_v2.0.a1 Prupe.6G025600_v2.0.a1
pyrus_communis	pycom03g02440 pycom10g28980 pycom11g02860
rosa_chinensis	RchiOBHm_Chr5g0000381 RchiOBHm_Chr5g0076451
rosa_laevigata	RLG00000030861 RLG00000030862 RLG00000036620
rosa_multiflora	Rmu_co8411395.1_g000001 Rmu_sc0000369.1_g000018 Rmu_sc0001680.1_g000004 Rmu_ssc0000181.1_g000002 Rmu_ssc0000385.1_g000014
rosa_roxburghii	Rroxscaffold_1G00075770 Rroxscaffold_1G00075780
rosa_rugosa	Rorug04G0383300 Rorug04G0383300 Rorug05G0447900 Rorug05G0448000 Rorug05G0448100
rosa_samantha	Rh5AG003200 Rh5AG502800 Rh5BG004200 Rh5BG524500 Rh5CG003400 Rh5CG548100 Rh5DG003100 Rh5DG003200 Rh5DG536300 Rh7BG161800
rosa_wichuraiana	Rw5G000310 Rw5G046640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	424, 814
AccII	CGCG	2 cut(s)	286, 608
AciI	CCGC	6 cut(s)	233, 284, 574, 606, 644, 740
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	1 cut(s)	869
AcyI	GRCGYC	1 cut(s)	815
AfiI	CCNNNNNNNGG	3 cut(s)	88, 524, 622
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	171, 215, 523, 553, 704
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	5 cut(s)	221, 263, 364, 499, 836
AluI	AGCT	5 cut(s)	221, 263, 364, 499, 836
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	1 cut(s)	869
AspLEI	GCGC	2 cut(s)	140, 817
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	3 cut(s)	273, 455, 579
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	12
BanI	GGYRCC	2 cut(s)	424, 814
BanII	GRGCYC	2 cut(s)	186, 366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	2 cut(s)	89, 259
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	2 cut(s)	297, 866
BfoI	RGCGCY	1 cut(s)	818
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	3 cut(s)	233, 606, 834
BlsI	GCNGC	3 cut(s)	234, 607, 835
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	4 cut(s)	426, 642, 816, 853
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 524, 622
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	88, 524, 622
BseMII	CTCAG	3 cut(s)	351, 669, 735
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	845
Bsh1236I	CGCG	2 cut(s)	286, 608
BshNI	GGYRCC	2 cut(s)	424, 814
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	421, 767
BslI	CCNNNNNNNGG	3 cut(s)	88, 524, 622
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	421, 767
Bso31I	GGTCTC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	186, 366
Bsp143I	GATC	2 cut(s)	747, 841
BspACI	CCGC	6 cut(s)	233, 284, 574, 606, 644, 740
BspCNI	CTCAG	3 cut(s)	352, 670, 736
BspFNI	CGCG	2 cut(s)	286, 608
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	4 cut(s)	426, 642, 816, 853
BspPI	GGATC	1 cut(s)	742
BspT107I	GGYRCC	2 cut(s)	424, 814
BspTI	CTTAAG	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	747, 841
BssNI	GRCGYC	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	360, 678, 744
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	2 cut(s)	286, 608
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	2 cut(s)	140, 817
BstKTI	GATC	2 cut(s)	750, 844
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	2 cut(s)	747, 841
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	286, 608
BstV1I	GCAGC	1 cut(s)	845
BstX2I	RGATCY	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	140, 817
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	275
CviAII	CATG	5 cut(s)	39, 255, 367, 413, 452
DdeI	CTNAG	3 cut(s)	360, 678, 744
DinI	GGCGCC	1 cut(s)	816
DpnI	GATC	2 cut(s)	749, 843
DpnII	GATC	2 cut(s)	747, 841
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	2 cut(s)	186, 366
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	186, 366
EgeI	GGCGCC	1 cut(s)	816
EheI	GGCGCC	1 cut(s)	816
FaeI	CATG	5 cut(s)	42, 258, 370, 416, 455
FaqI	GGGAC	2 cut(s)	421, 767
FatI	CATG	5 cut(s)	38, 254, 366, 412, 451
FauI	CCCGC	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	3 cut(s)	233, 606, 834
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	186, 366
Fsp4HI	GCNGC	3 cut(s)	233, 606, 834
FspBI	CTAG	2 cut(s)	297, 866
GlaI	GCGC	2 cut(s)	139, 816
GluI	GCNGC	3 cut(s)	233, 606, 834
HaeII	RGCGCY	1 cut(s)	818
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	140, 817
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	5 cut(s)	42, 258, 370, 416, 455
Hin6I	GCGC	2 cut(s)	138, 815
HinP1I	GCGC	2 cut(s)	138, 815
HinfI	GANTC	5 cut(s)	409, 483, 514, 535, 584
HphI	GGTGA	3 cut(s)	273, 455, 579
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	2 cut(s)	115, 856
Hpy188III	TCNNGA	7 cut(s)	25, 58, 160, 413, 581, 784, 839
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	5 cut(s)	246, 440, 698, 799, 805
HpyCH4IV	ACGT	2 cut(s)	272, 727
HpyCH4V	TGCA	4 cut(s)	7, 225, 243, 734
HpyF3I	CTNAG	3 cut(s)	360, 678, 744
HpySE526I	ACGT	2 cut(s)	272, 727
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	5 cut(s)	42, 258, 370, 416, 455
HspAI	GCGC	2 cut(s)	138, 815
KasI	GGCGCC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	2 cut(s)	747, 841
LmnI	GCTCC	2 cut(s)	268, 841
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	297, 866
MaeII	ACGT	2 cut(s)	272, 727
MaeIII	GTNAC	2 cut(s)	58, 338
MalI	GATC	2 cut(s)	749, 843
MboI	GATC	2 cut(s)	747, 841
MboII	GAAGA	2 cut(s)	104, 159
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	747
MhlI	GDGCHC	2 cut(s)	186, 366
MluCI	AATT	4 cut(s)	591, 712, 859, 869
Mly113I	GGCGCC	1 cut(s)	815
MlyI	GAGTC	3 cut(s)	403, 492, 508
MmeI	TCCRAC	2 cut(s)	173, 271
MnlI	CCTC	6 cut(s)	3, 43, 134, 175, 626, 662
MseI	TTAA	2 cut(s)	66, 438
MslI	CAYNNNNRTG	1 cut(s)	456
MspCI	CTTAAG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	286, 608
NarI	GGCGCC	1 cut(s)	815
NdeII	GATC	2 cut(s)	747, 841
NlaIII	CATG	5 cut(s)	42, 258, 370, 416, 455
NlaIV	GGNNCC	4 cut(s)	426, 642, 816, 853
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	42
PagI	TCATGA	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	535, 584
PflFI	GACNNNGTC	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	234, 607, 835
PleI	GAGTC	3 cut(s)	403, 491, 508
PluTI	GGCGCC	1 cut(s)	818
PpsI	GAGTC	3 cut(s)	403, 491, 508
PpuMI	RGGWCCY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	426, 642, 816, 853
PspPI	GGNCC	1 cut(s)	12
PspPPI	RGGWCCY	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	747
PsyI	GACNNNGTC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	66, 438
SatI	GCNGC	3 cut(s)	233, 606, 834
Sau3AI	GATC	2 cut(s)	747, 841
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	3 cut(s)	403, 492, 508
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	186, 366
SfaNI	GCATC	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	816
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	591, 712, 859, 869
SsiI	CCGC	6 cut(s)	233, 284, 574, 606, 644, 740
SspDI	GGCGCC	1 cut(s)	814
SspMI	CTAG	2 cut(s)	297, 866
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	275, 730
TaqI	TCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	591, 712, 859, 869
TauI	GCSGC	2 cut(s)	235, 608
TfiI	GAWTC	2 cut(s)	535, 584
Tru1I	TTAA	2 cut(s)	66, 438
Tru9I	TTAA	2 cut(s)	66, 438
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	842
TspGWI	ACGGA	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	2 cut(s)	297, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.