Rorug05G0448100

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
62016408 .. 62018089
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0448100.1

Sequence Viewer

Length: 1449 bp
ATGGAACATGTATTAAATAGCCTTTCCCATCAATTGAATGACTCAAGAGGCTTACACTCTTTGACATGGGAAGCTGGAAGAAGCCTCATCTGTTTTAAAGACAATATCTGTAACTTGTCATACCTTACAGGTGTCACACTCTCAGGGTGCTCAAATCTCAATAGCTTGCCCGTGAACTTTGGGAATTCAGATTCCTTGCTGGGCCTTGAAGTAGAGAGAAGTGGTATAAAGCAACTCCCATCCTCTCTTTTACGCGTGAACCAGCTTGAAACATTATCATGTGAAGCATCTAAAGAAGTGACGGCACCCTTTTCATCATGGCCATCATCACCATCAACTAATAATTGTGTTGTTGAAGTGGTTTCCGAAATATATAAAATGGAAGTGCTATTACATCTTGATCAGGTGGTTATTGTTCGCTTTGTTGGAATATGTGGAGTAGGTGGCATTGGTAAAACAACCATCGCTAGTGCTGTTTATGACAAAATTACTTCTCTATTTGAATACCATTGCTTTCTTGAGAATTTCAGGGAAGCTTTCACAAAGAAGGGTGAAAGACAAATGCGAGAAGAACTTCTTTCTAGAATCTTGACTGGAAAGGTGCAGAGTCTAGGTACTTTGAATAGAACTTCGAATATGATAATGAAATATCTAAGTACGAAAAAAGTTCTGCTTGTTCTTGATGATGTAGATGATATAGCTCCGATTGAAACATTACTGGGACAGAGATATTCATTTGGTGGAGGGAGTAGAATCATCATAACGACTAGAAATAAACAAATTCTTAGTGGAGATAATGCGATGAAGTATTGCCCTGGCTTGTGGACACCTAAAGAAGCTCTTGTGCTCTTCTCGCAGTTTGCCTTCGGTACAGTTGAACCCCCAACAGCGTACCTTCAACTCTCGCAGCATGTCATACAACTTGCACAAGGTCTACCTTTAGCACTTAAGGTCTTAGGAACTTCTTTGAAGATAAGAATACGTGAGTGGGAAGATTTATTGCAGAAGTTTGAGAAAAGTGATCACATGGGAGTTCAGCAAGTGCTGCGGACATGCTTTGACAATCTAGATAATTCAAAAAAGAGCATAATTCTAGATGTTGCGTGTTTCTTTAAAGGAATGAAAACAGACTATGCAATATCAATTCTAGAATGTTGTGGCTTCTTCCCCTTTTCTGGAATACAAATTCTAATTCAGAGATCTCTAATAGCTATCTCACTGAGGGACCACACTCTCAAAATGCATGATTTAGTACAGGATATGGGTTGGGAAATCATAAGCCAAGAACATGTGGAAGAGCCTGGAAATCGCAGTCGGTTATGGAGTTATAACGATGTTCATCATGCCACTATTGCAGTTGAGGTTATAACCCTTGATTTGTCGAACTCCAAAGAGGTATACATAACTGCACAGGCTTTTGATAAAATGGTGAAACTCAGACTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

53.99

Weight (kDa)

6.47

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 132 - 289 1.1e-17 NB-ARC domain
WHD_ROQ1 PF23282 359 - 427 2.7e-16 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1329, 1367
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 2 cut(s) 934, 1398
AccII CGCG 1 cut(s) 255
AciI CCGC 1 cut(s) 1048
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 4 cut(s) 184, 523, 780, 1185
AfaI GTAC 5 cut(s) 616, 658, 871, 893, 1254
AfiI CCNNNNNNNGG 1 cut(s) 1175
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 3 cut(s) 7, 253, 1288
AjnI CCWGG 2 cut(s) 814, 1300
AluBI AGCT 7 cut(s) 74, 165, 265, 536, 701, 839, 1211
AluI AGCT 7 cut(s) 74, 165, 265, 536, 701, 839, 1211
Alw21I GWGCWC 2 cut(s) 152, 849
AoxI GGCC 2 cut(s) 202, 320
ApeKI GCWGC 2 cut(s) 907, 1045
ApoI RAATTY 4 cut(s) 184, 523, 780, 1185
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 2 cut(s) 202, 1225
AsuHPI GGTGA 3 cut(s) 321, 563, 1441
AsuII TTCGAA 1 cut(s) 632
AvaII GGWCC 1 cut(s) 1225
BalI TGGCCA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
Bbv12I GWGCWC 2 cut(s) 152, 849
BbvI GCAGC 2 cut(s) 919, 1032
BccI CCATC 5 cut(s) 36, 247, 331, 340, 470
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 2 cut(s) 816, 1302
BclI TGATCA 2 cut(s) 400, 1021
BfaI CTAG 7 cut(s) 468, 582, 611, 768, 1067, 1094, 1148
BfrI CTTAAG 1 cut(s) 947
BglII AGATCT 1 cut(s) 1199
BisI GCNGC 2 cut(s) 908, 1046
BlsI GCNGC 2 cut(s) 909, 1047
Bme1390I CCNGG 2 cut(s) 816, 1302
Bme18I GGWCC 1 cut(s) 1225
BmgT120I GGNCC 2 cut(s) 202, 1225
BmiI GGNNCC 2 cut(s) 306, 1226
BmrFI CCNGG 2 cut(s) 816, 1302
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 632
BpuEI CTTGAG 2 cut(s) 28, 539
BsaAI YACGTR 1 cut(s) 983
BsaBI GATNNNNATC 1 cut(s) 1338
BsaJI CCNNGG 1 cut(s) 814
Bsc4I CCNNNNNNNGG 1 cut(s) 1175
Bse1I ACTGG 2 cut(s) 598, 723
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 1338
BseBI CCWGG 2 cut(s) 816, 1302
BseDI CCNNGG 1 cut(s) 814
BseGI GGATG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 1 cut(s) 1175
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 156, 1211
BseNI ACTGG 2 cut(s) 598, 723
BseXI GCAGC 2 cut(s) 919, 1032
BseYI CCCAGC 1 cut(s) 199
BsgI GTGCAG 2 cut(s) 623, 1392
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 204, 322
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 152, 849
BslFI GGGAC 2 cut(s) 735, 1238
BslI CCNNNNNNNGG 1 cut(s) 1175
BsmFI GGGAC 2 cut(s) 735, 1238
BsnI GGCC 2 cut(s) 204, 322
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 2 cut(s) 152, 849
Bsp143I GATC 3 cut(s) 400, 1021, 1199
BspACI CCGC 1 cut(s) 1048
BspANI GGCC 2 cut(s) 204, 322
BspCNI CTCAG 3 cut(s) 155, 1212, 1449
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 306, 1226
BspQI GCTCTTC 2 cut(s) 854, 1290
BspT104I TTCGAA 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 2 cut(s) 598, 723
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 3 cut(s) 400, 1021, 1199
BssNAI GTATAC 1 cut(s) 1399
Bst1107I GTATAC 1 cut(s) 1399
Bst2UI CCWGG 2 cut(s) 816, 1302
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 2 cut(s) 854, 1290
BstAFI CTTAAG 1 cut(s) 947
BstAPI GCANNNNNTGC 1 cut(s) 1045
BstBAI YACGTR 1 cut(s) 983
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 6 cut(s) 142, 653, 785, 955, 1220, 1436
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 3 cut(s) 403, 1024, 1202
BstMBI GATC 3 cut(s) 400, 1021, 1199
BstMWI GCNNNNNNNGC 3 cut(s) 853, 1045, 1352
BstNI CCWGG 2 cut(s) 816, 1302
BstNSI RCATGY 4 cut(s) 11, 914, 1056, 1292
BstSCI CCNGG 2 cut(s) 814, 1300
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 919, 1032
BstX2I RGATCY 1 cut(s) 1199
BstYI RGATCY 1 cut(s) 1199
BstZ17I GTATAC 1 cut(s) 1399
BsuRI GGCC 2 cut(s) 204, 322
BtgZI GCGATG 2 cut(s) 448, 815
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 1217
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 202, 1225
Csp6I GTAC 5 cut(s) 615, 657, 870, 892, 1253
CviQI GTAC 5 cut(s) 615, 657, 870, 892, 1253
DdeI CTNAG 6 cut(s) 142, 653, 785, 955, 1220, 1436
DpnI GATC 3 cut(s) 402, 1023, 1201
DpnII GATC 3 cut(s) 400, 1021, 1199
DraI TTTAAA 2 cut(s) 97, 1114
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 854, 1290
EarI CTCTTC 2 cut(s) 854, 1290
Eco47I GGWCC 1 cut(s) 1225
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 814, 1300
EcoT22I ATGCAT 1 cut(s) 1245
FalI AAGNNNNNCTT 6 cut(s) 561, 593, 657, 689, 825, 857
FaqI GGGAC 2 cut(s) 735, 1238
FbaI TGATCA 2 cut(s) 400, 1021
FblI GTMKAC 2 cut(s) 934, 1398
Fnu4HI GCNGC 2 cut(s) 908, 1046
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 908, 1046
FspBI CTAG 7 cut(s) 468, 582, 611, 768, 1067, 1094, 1148
GluI GCNGC 2 cut(s) 908, 1046
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 2 cut(s) 204, 322
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 41, 191, 585, 607, 753
HphI GGTGA 3 cut(s) 321, 563, 1441
Hpy166II GTNNAC 5 cut(s) 175, 259, 825, 935, 1399
Hpy188I TCNGA 5 cut(s) 190, 367, 705, 1197, 1439
Hpy8I GTNNAC 5 cut(s) 175, 259, 825, 935, 1399
HpyAV CCTTC 3 cut(s) 541, 874, 905
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 1 cut(s) 982
HpyCH4V TGCA 7 cut(s) 604, 926, 1003, 1136, 1243, 1355, 1409
HpyF10VI GCNNNNNNNGC 3 cut(s) 853, 1045, 1352
HpyF3I CTNAG 6 cut(s) 142, 653, 785, 955, 1220, 1436
HpySE526I ACGT 1 cut(s) 982
Ksp22I TGATCA 2 cut(s) 400, 1021
Kzo9I GATC 3 cut(s) 400, 1021, 1199
LguI GCTCTTC 2 cut(s) 854, 1290
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 2 cut(s) 919, 1032
LweI GCATC 1 cut(s) 296
MaeI CTAG 7 cut(s) 468, 582, 611, 768, 1067, 1094, 1148
MaeII ACGT 1 cut(s) 982
MaeIII GTNAC 3 cut(s) 110, 133, 298
MalI GATC 3 cut(s) 402, 1023, 1201
MboI GATC 3 cut(s) 400, 1021, 1199
MboII GAAGA 7 cut(s) 90, 581, 841, 982, 1004, 1156, 1307
MfeI CAATTG 1 cut(s) 32
MflI RGATCY 1 cut(s) 1199
MhlI GDGCHC 2 cut(s) 152, 849
MlsI TGGCCA 1 cut(s) 322
MluI ACGCGT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 322
MlyI GAGTC 2 cut(s) 35, 616
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 7 cut(s) 41, 95, 253, 737, 1215, 1354, 1387
Mox20I TGGCCA 1 cut(s) 322
Mph1103I ATGCAT 1 cut(s) 1245
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 1 cut(s) 322
MseI TTAA 4 cut(s) 14, 96, 948, 1113
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 322
MspCI CTTAAG 1 cut(s) 947
MspR9I CCNGG 2 cut(s) 816, 1302
MunI CAATTG 1 cut(s) 32
MvaI CCWGG 2 cut(s) 816, 1302
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 853, 1045, 1352
NdeII GATC 3 cut(s) 400, 1021, 1199
NlaIV GGNNCC 2 cut(s) 306, 1226
NmuCI GTSAC 2 cut(s) 133, 298
NsiI ATGCAT 1 cut(s) 1245
NspI RCATGY 4 cut(s) 11, 914, 1056, 1292
NspV TTCGAA 1 cut(s) 632
PciI ACATGT 2 cut(s) 7, 1288
PciSI GCTCTTC 2 cut(s) 854, 1290
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 191, 585, 753
PkrI GCNGC 2 cut(s) 909, 1047
PleI GAGTC 2 cut(s) 35, 615
PpsI GAGTC 2 cut(s) 35, 615
Ppu21I YACGTR 1 cut(s) 983
PscI ACATGT 2 cut(s) 7, 1288
PsiI TTATAA 2 cut(s) 1329, 1367
Psp6I CCWGG 2 cut(s) 814, 1300
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 814, 1300
PspN4I GGNNCC 2 cut(s) 306, 1226
PspPI GGNCC 2 cut(s) 202, 1225
PsuI RGATCY 1 cut(s) 1199
RsaI GTAC 5 cut(s) 616, 658, 871, 893, 1254
RsaNI GTAC 5 cut(s) 615, 657, 870, 892, 1253
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 2 cut(s) 854, 1290
SaqAI TTAA 4 cut(s) 14, 96, 948, 1113
SatI GCNGC 2 cut(s) 908, 1046
Sau3AI GATC 3 cut(s) 400, 1021, 1199
Sau96I GGNCC 2 cut(s) 202, 1225
SchI GAGTC 2 cut(s) 35, 616
ScrFI CCNGG 2 cut(s) 816, 1302
SduI GDGCHC 2 cut(s) 152, 849
SfaNI GCATC 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 632
SinI GGWCC 1 cut(s) 1225
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 3 cut(s) 43, 518, 947
SmoI CTYRAG 3 cut(s) 43, 518, 947
SsiI CCGC 1 cut(s) 1048
SspMI CTAG 7 cut(s) 468, 582, 611, 768, 1067, 1094, 1148
StyD4I CCNGG 2 cut(s) 814, 1300
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 1 cut(s) 985
TaqI TCGA 2 cut(s) 632, 1382
TatI WGTACW 1 cut(s) 1252
TfiI GAWTC 3 cut(s) 191, 585, 753
Tru1I TTAA 4 cut(s) 14, 96, 948, 1113
Tru9I TTAA 4 cut(s) 14, 96, 948, 1113
TscAI CASTG 1 cut(s) 1224
TseFI GTSAC 2 cut(s) 133, 298
TseI GCWGC 2 cut(s) 907, 1045
Tsp45I GTSAC 2 cut(s) 133, 298
TspDTI ATGAA 6 cut(s) 303, 659, 723, 818, 1136, 1328
TspRI CASTG 1 cut(s) 1224
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 1225
XapI RAATTY 4 cut(s) 184, 523, 780, 1185
XbaI TCTAGA 4 cut(s) 581, 1066, 1093, 1147
XceI RCATGY 4 cut(s) 11, 914, 1056, 1292
XmiI GTMKAC 2 cut(s) 934, 1398
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 7 cut(s) 468, 582, 611, 768, 1067, 1094, 1148
Zsp2I ATGCAT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.