Rorug05G0447900

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
61987393 .. 61988570
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0447900.1

Sequence Viewer

Length: 492 bp
ATGGATGCACAAATGCAAATAGTGGTGCCTGTTTTCTACGAAGTAGATCCATCTGATGTTCGTAAGCTGAAGGGAACTTTTGCAGAAGCTTTTGCTAAACATGAAGACGGTTCTAACGCTAACAAGGAAGAGGTGCACAGCTGGAAGACCGCTCTAACTAGAGCCACCAATCTATCTGGCTGGGATTCGCGAGATTACAAGGATGACGGTGAGCTCATTGAGAAAATTGTAAAAGATACTCTTCATAAGTTGATTCAGGTCTCATCAAGTAAACCACATGGCTTGATTGGAATGGATTACCACCTTACTGAAATGTATTCACTTTTAGGTCTTGGGGAGGATGATGTTCACTTTGTTGGGATATGGGGTATGGGCGGTATAGGAAAAACAACGATTGCCAAAGCTGTTTATGATGAAATAGCTTGTCAATTTGATCATTCTTGCTTTCTTGATGATGTCAAGGAAAGTTTCATGAAGAAGAGTAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

5.3

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 4 - 91 7.9e-20 TIR domain
NB-ARC PF00931 113 - 154 3.9e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 190
AciI CCGC 2 cut(s) 150, 375
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 89
AluBI AGCT 6 cut(s) 67, 89, 141, 214, 404, 422
AluI AGCT 6 cut(s) 67, 89, 141, 214, 404, 422
Alw21I GWGCWC 2 cut(s) 138, 216
Alw26I GTCTC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 111, 152
Bbv12I GWGCWC 2 cut(s) 138, 216
BccI CCATC 1 cut(s) 58
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 27
BpiI GAAGAC 2 cut(s) 111, 152
BsaI GGTCTC 1 cut(s) 265
BseGI GGATG 3 cut(s) 10, 208, 346
BseSI GKGCMC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 138, 216
BsmAI GTCTC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 138, 216
Bsp143I GATC 2 cut(s) 46, 433
Bsp68I TCGCGA 1 cut(s) 190
BspACI CCGC 2 cut(s) 150, 375
BspFNI CGCG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 152
BssMI GATC 2 cut(s) 46, 433
Bst4CI ACNGT 2 cut(s) 110, 209
Bst6I CTCTTC 3 cut(s) 123, 246, 473
BstF5I GGATG 3 cut(s) 10, 208, 346
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 2 cut(s) 49, 436
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 46, 433
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 111, 152
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 3 cut(s) 10, 208, 346
BtuMI TCGCGA 1 cut(s) 190
CciI TCATGA 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 3 cut(s) 101, 278, 472
CviJI RGCY 9 cut(s) 67, 89, 141, 164, 180, 214, 282, 404, 422
CviKI_1 RGCY 9 cut(s) 67, 89, 141, 164, 180, 214, 282, 404, 422
DpnI GATC 2 cut(s) 48, 435
DpnII GATC 2 cut(s) 46, 433
Eam1104I CTCTTC 3 cut(s) 123, 246, 473
EarI CTCTTC 3 cut(s) 123, 246, 473
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 3 cut(s) 104, 281, 475
FaiI YATR 9 cut(s) 102, 246, 279, 364, 371, 380, 411, 473, 490
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 3 cut(s) 100, 277, 471
FbaI TGATCA 1 cut(s) 433
FokI GGATG 3 cut(s) 17, 215, 353
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 104, 281, 475
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 2 cut(s) 185, 253
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 136, 272, 349
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 189, 449, 472
Hpy8I GTNNAC 3 cut(s) 136, 272, 349
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 110, 209
HpyCH4V TGCA 4 cut(s) 8, 16, 83, 136
Hsp92II CATG 3 cut(s) 104, 281, 475
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 46, 433
LpnPI CCDG 5 cut(s) 42, 127, 162, 166, 242
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 48, 435
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 46, 433
MboII GAAGA 6 cut(s) 116, 140, 157, 233, 487, 490
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 2 cut(s) 138, 216
MluCI AATT 2 cut(s) 225, 428
MnlI CCTC 2 cut(s) 124, 331
MspA1I CMGCKG 1 cut(s) 141
MvnI CGCG 1 cut(s) 190
NdeII GATC 2 cut(s) 46, 433
NlaIII CATG 3 cut(s) 104, 281, 475
NlaIV GGNNCC 1 cut(s) 27
NruI TCGCGA 1 cut(s) 190
PagI TCATGA 1 cut(s) 471
PfeI GAWTC 2 cut(s) 185, 253
Psp124BI GAGCTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 141
RruI TCGCGA 1 cut(s) 190
SacI GAGCTC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 46, 433
SduI GDGCHC 2 cut(s) 138, 216
Sse9I AATT 2 cut(s) 225, 428
SsiI CCGC 2 cut(s) 150, 375
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 2 cut(s) 110, 209
TasI AATT 2 cut(s) 225, 428
TfiI GAWTC 2 cut(s) 185, 253
TspDTI ATGAA 5 cut(s) 117, 233, 429, 460, 488
VneI GTGCAC 1 cut(s) 134
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.