Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020544

Physical Location & Seq

Genomic Coordinates Forward (+)

228693 .. 236180

Gene Structure 7488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGTTCTGTCCTAAAGGAGACTTGCACACTCTTCGGCATAGGCAGCCAGGAAAGCATTTTTCTGAGCAAGCAGTAAAATTCTATGTTGCAGAGGTCCTGTTATCTCTGGAATACCTCCACATGCTTGGGATTGTCTATCGTGACCTTAAGCCAGAAAATGTCCTGGTGAGGGAAGATGGACATATAATGCTCTCTAATGTTGACCTCTCACTCCATTGTGCTTTTAGTCCAACTCTTGTCAAGACCTCTTCAATGGAGTTTGGCCCCTTGCGTAAAAACCTTGTTTATTATGTTCAACCAGCTTGCATTGAGCCGCCTTCCTACATCCAACCATCCTGTGTGGCTCCTACAACGTGCTTCTCAGTGCGTCTATTTTCTAGCAAGTCCAAAAAGGATAAAAAACCTAAAAACGAAACTGGTAACCAAGTAAGACCATTACCTGTGCTCATGGCAGAACTAACTGATGCCCGGTCTATGTCATTTGTTGGTACTCATGAGTATTTGGCACCTGAGATTATTAAGGGTGAAGGTCATGGAAGTGCTATTGATTGGTGGACTTTTGGAATCTTTTTGTATGAGTTGTTGTTTGGTAAGACTCCTTTCAAGGGTTATGGGAATCAAGCAACATTGTTCAATGTTATGGGAGTGAATTGGGCATTGATACGTTGTGCAACCCCGCCTGAGATCCCAAAGCTTGTTGAGATTGAGCAGATACCTGTCCCGACAATGTCATCGAGTGAGAAGGAGAAGCAAGCAAGGAAGCTTCTCTTCACGCGGCAGCAAAATGAAGATTGCGAGCAGCTGTTTCTACAGTTGAGTGCGAATAAGATTCACTATTGCTGCTGTTTGAGAGTTGACAAGGAACTGTGTTTGGTTGCTAAAGTCAATGGTGGATTTTTTTTCCATCTGACTGAATTGGTCCTGGTTACTCTTCGGAAGGGAGTGGAAGAAGGGAAGAGATTCCTGCTTCATAAACCTTATTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

37.59

Weight (kDa)

8.54

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 71	1.3e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 73	3.2e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	159 - 215	2e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000361
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002900 Rh5AG003000 Rh5BG004100 Rh5CG003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccII	CGCG	1 cut(s)	778
AciI	CCGC	3 cut(s)	317, 680, 778
AclWI	GGATC	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	172, 608
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	255, 299, 607, 637
AjnI	CCWGG	3 cut(s)	49, 165, 924
AluBI	AGCT	4 cut(s)	305, 697, 766, 805
AluI	AGCT	4 cut(s)	305, 697, 766, 805
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	4 cut(s)	46, 781, 802, 843
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	962
AspS9I	GGNCC	3 cut(s)	97, 266, 922
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	181, 539
AvaII	GGWCC	2 cut(s)	97, 922
BanI	GGYRCC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	58, 793, 814, 830
BccI	CCATC	3 cut(s)	173, 343, 915
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	3 cut(s)	51, 167, 926
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	812
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	6 cut(s)	47, 317, 779, 782, 803, 844
BlsI	GCNGC	6 cut(s)	48, 318, 780, 783, 804, 845
Bme1390I	CCNGG	4 cut(s)	51, 167, 472, 926
Bme18I	GGWCC	2 cut(s)	97, 922
BmgT120I	GGNCC	3 cut(s)	97, 266, 922
BmiI	GGNNCC	3 cut(s)	268, 348, 510
BmrFI	CCNGG	4 cut(s)	51, 167, 472, 926
BmsI	GCATC	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 608
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	3 cut(s)	51, 167, 926
BseGI	GGATG	2 cut(s)	327, 335
BseLI	CCNNNNNNNGG	2 cut(s)	172, 608
BseMII	CTCAG	4 cut(s)	57, 378, 504, 675
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	4 cut(s)	58, 793, 814, 830
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	172, 608
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	687
BspACI	CCGC	3 cut(s)	317, 680, 778
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	4 cut(s)	58, 377, 505, 676
BspFNI	CGCG	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	268, 348, 510
BspPI	GGATC	1 cut(s)	682
BspT107I	GGYRCC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	51, 167, 926
Bst4CI	ACNGT	2 cut(s)	816, 870
Bst6I	CTCTTC	5 cut(s)	39, 256, 776, 939, 953
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	72, 307, 756, 800
BstDEI	CTNAG	4 cut(s)	66, 364, 513, 684
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	327, 335
BstFNI	CGCG	1 cut(s)	778
BstKTI	GATC	1 cut(s)	690
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 55
BstNI	CCWGG	3 cut(s)	51, 167, 926
BstNSI	RCATGY	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	49, 165, 470, 924
BstSFI	CTRYAG	1 cut(s)	812
BstUI	CGCG	1 cut(s)	778
BstV1I	GCAGC	4 cut(s)	58, 793, 814, 830
BstX2I	RGATCY	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	327, 335
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	4 cut(s)	72, 307, 756, 800
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	97, 266, 922
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	4 cut(s)	124, 451, 497, 536
CviJI	RGCY	9 cut(s)	49, 154, 267, 305, 316, 347, 697, 766, 805
CviKI_1	RGCY	9 cut(s)	49, 154, 267, 305, 316, 347, 697, 766, 805
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	4 cut(s)	66, 364, 513, 684
DpnI	GATC	1 cut(s)	689
DpnII	GATC	1 cut(s)	687
Eam1104I	CTCTTC	5 cut(s)	39, 256, 776, 939, 953
EarI	CTCTTC	5 cut(s)	39, 256, 776, 939, 953
Eco47I	GGWCC	2 cut(s)	97, 922
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	49, 165, 924
FaeI	CATG	4 cut(s)	127, 454, 500, 539
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	4 cut(s)	123, 450, 496, 535
FauI	CCCGC	1 cut(s)	687
Fnu4HI	GCNGC	6 cut(s)	47, 317, 779, 782, 803, 844
FokI	GGATG	2 cut(s)	314, 322
Fsp4HI	GCNGC	6 cut(s)	47, 317, 779, 782, 803, 844
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	6 cut(s)	47, 317, 779, 782, 803, 844
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	4 cut(s)	127, 454, 500, 539
HincII	GTYRAC	2 cut(s)	205, 859
HindII	GTYRAC	2 cut(s)	205, 859
HindIII	AAGCTT	2 cut(s)	695, 764
HinfI	GANTC	5 cut(s)	567, 598, 619, 832, 963
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	2 cut(s)	181, 539
Hpy166II	GTNNAC	3 cut(s)	205, 558, 859
Hpy188I	TCNGA	4 cut(s)	67, 912, 939, 992
Hpy188III	TCNNGA	5 cut(s)	110, 143, 244, 497, 724
Hpy8I	GTNNAC	3 cut(s)	205, 558, 859
HpyAV	CCTTC	5 cut(s)	330, 524, 739, 934, 947
HpyCH4III	ACNGT	2 cut(s)	816, 870
HpyCH4IV	ACGT	2 cut(s)	356, 667
HpyCH4V	TGCA	4 cut(s)	28, 92, 309, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 55
HpyF3I	CTNAG	4 cut(s)	66, 364, 513, 684
HpySE526I	ACGT	2 cut(s)	356, 667
Hsp92II	CATG	4 cut(s)	127, 454, 500, 539
Kzo9I	GATC	1 cut(s)	687
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	4 cut(s)	58, 793, 814, 830
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	356, 667
MaeIII	GTNAC	3 cut(s)	143, 422, 928
MalI	GATC	1 cut(s)	689
MboI	GATC	1 cut(s)	687
MboII	GAAGA	8 cut(s)	26, 188, 243, 763, 803, 926, 962, 970
MflI	RGATCY	1 cut(s)	687
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	3 cut(s)	80, 652, 917
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	257, 355
MnlI	CCTC	5 cut(s)	88, 128, 165, 218, 259
MroXI	GAANNNNTTC	1 cut(s)	962
MseI	TTAA	2 cut(s)	150, 522
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	805
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	4 cut(s)	51, 167, 472, 926
MvaI	CCWGG	3 cut(s)	51, 167, 926
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	2 cut(s)	46, 55
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	687
NlaIII	CATG	4 cut(s)	127, 454, 500, 539
NlaIV	GGNNCC	3 cut(s)	268, 348, 510
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	127
PagI	TCATGA	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	4 cut(s)	567, 619, 832, 963
PflFI	GACNNNGTC	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	48, 318, 780, 783, 804, 845
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	3 cut(s)	49, 165, 924
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	49, 165, 924
PspN4I	GGNNCC	3 cut(s)	268, 348, 510
PspPI	GGNCC	3 cut(s)	97, 266, 922
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	687
PsyI	GACNNNGTC	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	805
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	150, 522
SatI	GCNGC	6 cut(s)	47, 317, 779, 782, 803, 844
Sau3AI	GATC	1 cut(s)	687
Sau96I	GGNCC	3 cut(s)	97, 266, 922
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	4 cut(s)	51, 167, 472, 926
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	812
SinI	GGWCC	2 cut(s)	97, 922
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	80, 652, 917
SsiI	CCGC	3 cut(s)	317, 680, 778
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	49, 165, 470, 924
TaaI	ACNGT	2 cut(s)	816, 870
TaiI	ACGT	2 cut(s)	359, 670
TaqI	TCGA	1 cut(s)	737
TasI	AATT	3 cut(s)	80, 652, 917
TauI	GCSGC	2 cut(s)	319, 781
TfiI	GAWTC	4 cut(s)	567, 619, 832, 963
Tru1I	TTAA	2 cut(s)	150, 522
Tru9I	TTAA	2 cut(s)	150, 522
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	4 cut(s)	46, 781, 802, 843
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	804, 962
TspRI	CASTG	1 cut(s)	372
Tth111I	GACNNNGTC	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	97, 922
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.