Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019016

Physical Location & Seq

Genomic Coordinates Forward (+)

2318117 .. 2320079

Gene Structure 1963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGCTCAATAAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGCACGTTAGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCTACCAGCATGTGAAGTTGGCTTGGTTTTCTAAGAGGTCCAAGAAGAAGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGAGGTGACTTACCCAACTGCTACTTCTTCTGTTTATGGCTACCCACTGCTTCCATGTCCCTCGCAGAATGGACAGCCAAGAGTTGAGCACTTGGTTGTTTCAGAAGGAGGGCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCGATGCCCGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGCTTCTATAAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCAGGATCACACATGTAGACCAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAGATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGGTGTTGGACAAACCTGCTGGTACAACAGTATGTATCATTATACAAACATTCTTTTTAGTATTTTGTTCATCCAATAACTTTTGTCTAGCATTGTCAATTTTTTTTTGTATGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

259

Amino Acids

28.95

Weight (kDa)

9.0

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019016)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003761
rosa_laevigata	RLG00000031173
rosa_multiflora	Rmu_co8372245.1_g000001
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033700 Rh5BG032100 Rh5CG036400 Rh5DG032500
rosa_wichuraiana	Rw5G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	425
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	2 cut(s)	348, 542
AfaI	GTAC	4 cut(s)	474, 572, 588, 685
AflIII	ACRYGT	2 cut(s)	541, 577
AgsI	TTSAA	2 cut(s)	193, 560
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	120, 383, 458, 488
AluI	AGCT	4 cut(s)	120, 383, 458, 488
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	348, 542
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	63, 308
Asp700I	GAANNNNTTC	1 cut(s)	527
AspA2I	CCTAGG	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	64, 156, 308
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	156
AvrII	CCTAGG	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	3 cut(s)	173, 530, 660
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	2 cut(s)	475, 557
BfaI	CTAG	3 cut(s)	317, 606, 749
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	685
BglII	AGATCT	1 cut(s)	364
BlnI	CCTAGG	1 cut(s)	605
BmcAI	AGTACT	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	64, 156, 308
BmsI	GCATC	1 cut(s)	417
BpiI	GAAGAC	3 cut(s)	173, 530, 660
Bpu14I	TTCGAA	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	432, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	432, 605
BseGI	GGATG	1 cut(s)	731
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	92, 365
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	2 cut(s)	65, 310
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	43, 59
BslFI	GGGAC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	65, 310
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	8, 288
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	340, 364, 534
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	65, 310
BspCNI	CTCAG	2 cut(s)	93, 364
BspFNI	CGCG	1 cut(s)	425
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	2 cut(s)	348, 542
BspQI	GCTCTTC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	432, 605
BssMI	GATC	3 cut(s)	340, 364, 534
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	508, 691
Bst6I	CTCTTC	2 cut(s)	110, 192
BstAUI	TGTACA	1 cut(s)	586
BstBAI	YACGTR	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	101, 150, 351
BstF5I	GGATG	1 cut(s)	731
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	343, 367, 537
BstMBI	GATC	3 cut(s)	340, 364, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	3 cut(s)	131, 545, 587
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	425
BstV2I	GAAGAC	3 cut(s)	173, 530, 660
BstX2I	RGATCY	2 cut(s)	340, 364
BstYI	RGATCY	2 cut(s)	340, 364
BsuRI	GGCC	2 cut(s)	65, 310
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	731
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	83, 242
BveI	ACCTGC	1 cut(s)	685
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	64, 156, 308
Csp6I	GTAC	4 cut(s)	473, 571, 587, 684
CviAII	CATG	6 cut(s)	35, 92, 128, 252, 542, 584
CviQI	GTAC	4 cut(s)	473, 571, 587, 684
DdeI	CTNAG	3 cut(s)	101, 150, 351
DpnI	GATC	3 cut(s)	342, 366, 536
DpnII	GATC	3 cut(s)	340, 364, 534
Eam1104I	CTCTTC	2 cut(s)	110, 192
EarI	CTCTTC	2 cut(s)	110, 192
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	6 cut(s)	38, 95, 131, 255, 545, 587
FalI	AAGNNNNNCTT	3 cut(s)	36, 163, 195
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	6 cut(s)	34, 91, 127, 251, 541, 583
FblI	GTMKAC	1 cut(s)	546
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	3 cut(s)	317, 606, 749
GlaI	GCGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	65, 310
HapII	CCGG	2 cut(s)	43, 59
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	6 cut(s)	38, 95, 131, 255, 545, 587
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	43, 59
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	107, 547, 589
Hpy188I	TCNGA	3 cut(s)	18, 102, 301
Hpy188III	TCNNGA	4 cut(s)	317, 338, 532, 633
Hpy8I	GTNNAC	3 cut(s)	107, 547, 589
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	508, 691
HpyCH4IV	ACGT	3 cut(s)	77, 569, 577
HpyCH4V	TGCA	4 cut(s)	75, 330, 362, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	101, 150, 351
HpySE526I	ACGT	3 cut(s)	77, 569, 577
Hsp92II	CATG	6 cut(s)	38, 95, 131, 255, 545, 587
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	3 cut(s)	340, 364, 534
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	380
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	3 cut(s)	317, 606, 749
MaeII	ACGT	3 cut(s)	77, 569, 577
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	342, 366, 536
MboI	GATC	3 cut(s)	340, 364, 534
MboII	GAAGA	9 cut(s)	127, 175, 178, 209, 216, 335, 535, 572, 665
MflI	RGATCY	2 cut(s)	340, 364
MhlI	GDGCHC	2 cut(s)	8, 288
MluCI	AATT	2 cut(s)	551, 759
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	443, 648
MnlI	CCTC	8 cut(s)	147, 193, 268, 299, 423, 426, 427, 435
MroXI	GAANNNNTTC	1 cut(s)	527
MspI	CCGG	2 cut(s)	43, 59
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	340, 364, 534
NlaIII	CATG	6 cut(s)	38, 95, 131, 255, 545, 587
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	3 cut(s)	131, 545, 587
NspV	TTCGAA	1 cut(s)	113
PciI	ACATGT	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	527
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	541
PspPI	GGNCC	3 cut(s)	64, 156, 308
PsuI	RGATCY	2 cut(s)	340, 364
RsaI	GTAC	4 cut(s)	474, 572, 588, 685
RsaNI	GTAC	4 cut(s)	473, 571, 587, 684
SapI	GCTCTTC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	340, 364, 534
Sau96I	GGNCC	3 cut(s)	64, 156, 308
ScaI	AGTACT	1 cut(s)	474
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	8, 288
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	2 cut(s)	551, 759
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	3 cut(s)	317, 606, 749
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	508, 691
TaiI	ACGT	3 cut(s)	80, 572, 580
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	551, 759
TatI	WGTACW	2 cut(s)	472, 586
TscAI	CASTG	2 cut(s)	90, 249
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	40, 666, 720
TspRI	CASTG	2 cut(s)	90, 249
VpaK11BI	GGWCC	1 cut(s)	156
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	3 cut(s)	131, 545, 587
XmaJI	CCTAGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	317, 606, 749
ZrmI	AGTACT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.