Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0019016

Physical Location & Seq

Genomic Coordinates Forward (+)

2868568 .. 2869366

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGCTCAGTAAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGTACGTTAGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCCACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCCAAGAAGAAGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGAGGTGACTTACCCAACTGCTACTTCTTCTGATTATGGCTACCCACTGCTTCCATGTCCCTCGCAGAATGGACCACCAAGAGTTGACCACTTGGTTGTTTCAGAAGGAGGGCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

118

Amino Acids

12.77

Weight (kDa)

8.64

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019016)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003761
rosa_laevigata	RLG00000031173
rosa_multiflora	Rmu_co8372245.1_g000001
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033700 Rh5BG032100 Rh5CG036400 Rh5DG032500
rosa_wichuraiana	Rw5G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	63, 308
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	4 cut(s)	64, 156, 269, 308
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	156, 269
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	317
Bme18I	GGWCC	2 cut(s)	156, 269
BmgT120I	GGNCC	4 cut(s)	64, 156, 269, 308
BpiI	GAAGAC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	21, 92
BshFI	GGCC	2 cut(s)	65, 310
BsiSI	CCGG	2 cut(s)	43, 59
BslFI	GGGAC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	65, 310
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	65, 310
BspCNI	CTCAG	2 cut(s)	20, 93
BspPI	GGATC	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	110, 192
BstBI	TTCGAA	1 cut(s)	113
BstDEI	CTNAG	4 cut(s)	7, 101, 150, 351
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	65, 310
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	83, 242
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	64, 156, 269, 308
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	35, 92, 128, 252
CviJI	RGCY	6 cut(s)	6, 65, 120, 140, 237, 310
CviKI_1	RGCY	6 cut(s)	6, 65, 120, 140, 237, 310
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	4 cut(s)	7, 101, 150, 351
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	110, 192
EarI	CTCTTC	2 cut(s)	110, 192
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	156, 269
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	4 cut(s)	38, 95, 131, 255
FaiI	YATR	8 cut(s)	36, 93, 129, 234, 253, 324, 326, 328
FalI	AAGNNNNNCTT	3 cut(s)	36, 163, 195
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	34, 91, 127, 251
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	65, 310
HapII	CCGG	2 cut(s)	43, 59
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	38, 95, 131, 255
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	43, 59
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	107, 283
Hpy188I	TCNGA	4 cut(s)	18, 102, 229, 301
Hpy188III	TCNNGA	2 cut(s)	317, 338
Hpy8I	GTNNAC	2 cut(s)	107, 283
HpyAV	CCTTC	2 cut(s)	127, 296
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	4 cut(s)	7, 101, 150, 351
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	38, 95, 131, 255
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	110
LpnPI	CCDG	6 cut(s)	14, 56, 72, 137, 323, 324
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	127, 175, 178, 209, 216, 335
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	147, 193, 268, 299
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	2 cut(s)	43, 59
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	38, 95, 131, 255
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspPI	GGNCC	4 cut(s)	64, 156, 269, 308
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	4 cut(s)	64, 156, 269, 308
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	80, 138, 158, 204
SfuI	TTCGAA	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	156, 269
SmiMI	CAYNNNNRTG	1 cut(s)	126
SspMI	CTAG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	90, 249
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	90, 249
VpaK11BI	GGWCC	2 cut(s)	156, 269
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.