Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019016

Physical Location & Seq

Genomic Coordinates Forward (+)

2279654 .. 2286351

Gene Structure 6698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTGCTTACTGGGGTAGGGAACTTGGCCAAGATCCATGGCTCAATAAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGCACGTTAGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCCACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCCAAGAAGAAGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGGGGTGACTTACCCAACTGCTACTTCTTCTGTTTATGGCTACCCACTGCTCCCATGTCCCTCGCAGAATGGACCGCCAAGAGTTGACCACTTGGTTGTTTCAGACGGAGGGCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACTGCGATGCCCGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGGAAAAGAGAGCTTCTATAAAAGGAAAAACTGAAAGAGAAGCACAGAAGACTTTCAGGATCACACATGTAGACAAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTATTCCTAGGTGCTATGAGATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGGTGTTGGACAAACCTGCTGGTACAACAGTTGGAGGAACCACAGACAACATCGAAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

253

Amino Acids

27.8

Weight (kDa)

8.88

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019016)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003761
rosa_laevigata	RLG00000031173
rosa_multiflora	Rmu_co8372245.1_g000001
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033700 Rh5BG032100 Rh5CG036400 Rh5DG032500
rosa_wichuraiana	Rw5G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	3 cut(s)	28, 384, 578
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	587
AfaI	GTAC	4 cut(s)	510, 608, 624, 721
AflIII	ACRYGT	2 cut(s)	577, 613
AgsI	TTSAA	2 cut(s)	229, 596
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	3 cut(s)	419, 494, 524
AluI	AGCT	3 cut(s)	419, 494, 524
AlwI	GGATC	3 cut(s)	28, 384, 578
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	3 cut(s)	27, 99, 344
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	563
AspA2I	CCTAGG	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	4 cut(s)	100, 192, 305, 344
AsuHPI	GGTGA	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	192, 305
AvrII	CCTAGG	1 cut(s)	641
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BalI	TGGCCA	1 cut(s)	29
BbsI	GAAGAC	3 cut(s)	209, 566, 696
BccI	CCATC	2 cut(s)	511, 593
BfaI	CTAG	2 cut(s)	353, 642
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	721
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	1 cut(s)	5
BlnI	CCTAGG	1 cut(s)	641
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	192, 305
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	4 cut(s)	100, 192, 305, 344
BmiI	GGNNCC	1 cut(s)	736
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	3 cut(s)	209, 566, 696
Bpu14I	TTCGAA	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	37, 468, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	3 cut(s)	16, 516, 665
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	37, 468, 641
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	128, 401
BseNI	ACTGG	3 cut(s)	16, 516, 665
BseRI	GAGGAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	29, 101, 346
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	79, 95
BslFI	GGGAC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	29, 101, 346
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	33, 376, 400, 570
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	3 cut(s)	29, 101, 346
BspCNI	CTCAG	2 cut(s)	129, 400
BspLI	GGNNCC	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	3 cut(s)	28, 384, 578
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	16, 516, 665
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	37, 468, 641
BssMI	GATC	4 cut(s)	33, 376, 400, 570
BssT1I	CCWWGG	2 cut(s)	37, 641
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	137, 186, 387
BstDSI	CCRYGG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	4 cut(s)	36, 379, 403, 573
BstMBI	GATC	4 cut(s)	33, 376, 400, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	3 cut(s)	167, 581, 623
BstSFI	CTRYAG	1 cut(s)	495
BstV2I	GAAGAC	3 cut(s)	209, 566, 696
BstX2I	RGATCY	3 cut(s)	33, 376, 400
BstYI	RGATCY	3 cut(s)	33, 376, 400
BsuRI	GGCC	3 cut(s)	29, 101, 346
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	119, 278
BveI	ACCTGC	1 cut(s)	721
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	4 cut(s)	100, 192, 305, 344
Csp6I	GTAC	4 cut(s)	509, 607, 623, 720
CviAII	CATG	7 cut(s)	38, 71, 128, 164, 288, 578, 620
CviQI	GTAC	4 cut(s)	509, 607, 623, 720
DdeI	CTNAG	3 cut(s)	137, 186, 387
DpnI	GATC	4 cut(s)	35, 378, 402, 572
DpnII	GATC	4 cut(s)	33, 376, 400, 570
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	37, 641
Eco47I	GGWCC	2 cut(s)	192, 305
Eco88I	CYCGRG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	37, 641
ErhI	CCWWGG	2 cut(s)	37, 641
FaeI	CATG	7 cut(s)	41, 74, 131, 167, 291, 581, 623
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 199, 231
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	7 cut(s)	37, 70, 127, 163, 287, 577, 619
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	353, 642
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	29, 101, 346
HapII	CCGG	2 cut(s)	79, 95
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	7 cut(s)	41, 74, 131, 167, 291, 581, 623
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	2 cut(s)	79, 95
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	4 cut(s)	143, 319, 583, 625
Hpy188I	TCNGA	3 cut(s)	54, 138, 337
Hpy188III	TCNNGA	4 cut(s)	353, 374, 568, 669
Hpy8I	GTNNAC	4 cut(s)	143, 319, 583, 625
HpyAV	CCTTC	2 cut(s)	163, 227
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	3 cut(s)	113, 605, 613
HpyCH4V	TGCA	4 cut(s)	111, 366, 398, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	137, 186, 387
HpySE526I	ACGT	3 cut(s)	113, 605, 613
Hsp92II	CATG	7 cut(s)	41, 74, 131, 167, 291, 581, 623
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	33, 376, 400, 570
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	288, 416
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	353, 642
MaeII	ACGT	3 cut(s)	113, 605, 613
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	35, 378, 402, 572
MboI	GATC	4 cut(s)	33, 376, 400, 570
MboII	GAAGA	8 cut(s)	163, 211, 214, 252, 371, 571, 608, 701
MflI	RGATCY	3 cut(s)	33, 376, 400
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	1 cut(s)	587
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	3 cut(s)	479, 684, 709
MnlI	CCTC	8 cut(s)	183, 304, 335, 459, 462, 463, 471, 725
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	2 cut(s)	79, 95
MwoI	GCNNNNNNNGC	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	33, 376, 400, 570
NlaIII	CATG	7 cut(s)	41, 74, 131, 167, 291, 581, 623
NlaIV	GGNNCC	1 cut(s)	736
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	3 cut(s)	167, 581, 623
NspV	TTCGAA	1 cut(s)	149
PciI	ACATGT	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	614
PscI	ACATGT	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	4 cut(s)	100, 192, 305, 344
PsuI	RGATCY	3 cut(s)	33, 376, 400
RsaI	GTAC	4 cut(s)	510, 608, 624, 721
RsaNI	GTAC	4 cut(s)	509, 607, 623, 720
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	146
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	33, 376, 400, 570
Sau96I	GGNCC	4 cut(s)	100, 192, 305, 344
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	149
SgrAI	CRCCGGYG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	192, 305
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	2 cut(s)	353, 642
StyI	CCWWGG	2 cut(s)	37, 641
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	3 cut(s)	116, 608, 616
TaqI	TCGA	2 cut(s)	149, 750
TasI	AATT	1 cut(s)	587
TatI	WGTACW	2 cut(s)	508, 622
TscAI	CASTG	2 cut(s)	126, 285
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	76, 702
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	126, 285
VpaK11BI	GGWCC	2 cut(s)	192, 305
XapI	RAATTY	1 cut(s)	587
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	3 cut(s)	167, 581, 623
XmaJI	CCTAGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	2 cut(s)	353, 642
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.