Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019016

Physical Location & Seq

Genomic Coordinates Forward (+)

2241799 .. 2244325

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGCACGTTAGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCTACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCCAAGAAGAAGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGAGGTGACTTACCCAACTGCTACTTCTTCTGTTTATGGCTACCCATATAATCGTCTGCTTCCATGTCCCTCGCAGAATGGACCGCCAAGAGTTGAGCACTTGGTTGTTTCAGAAGGAGGGCCTGTTCTAGAATATATATATGCAAAAATCTGGATCTTCCTGCTCAATCTTATCCATTTTGGAGCTGTATATTATGCCTTTGTATGTCCAAAGCCTCCTTCAACCGCGAAGCCCGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGCTTCTATCAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCAGTATCACACATGTAGACCAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGCTGTTGGACAAACCTGCTGGTACAATATTCTCAAAGCATACCCCTCTATCCTTGCAGCTCCTGGTCCTGGTTCACATGGAGAAAACATACAGTCTTTTGAGTAAAAACTGGTATAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

258

Amino Acids

29.27

Weight (kDa)

9.43

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019016)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003761
rosa_laevigata	RLG00000031173
rosa_multiflora	Rmu_co8372245.1_g000001
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033700 Rh5BG032100 Rh5CG036400 Rh5DG032500
rosa_wichuraiana	Rw5G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	416
AciI	CCGC	2 cut(s)	272, 414
AclWI	GGATC	1 cut(s)	350
AfaI	GTAC	4 cut(s)	465, 563, 579, 676
AfiI	CCNNNNNNNGG	1 cut(s)	721
AflIII	ACRYGT	2 cut(s)	532, 568
AgsI	TTSAA	3 cut(s)	184, 411, 551
AjnI	CCWGG	2 cut(s)	714, 720
AjuI	GAANNNNNNNTTGG	4 cut(s)	196, 228, 391, 423
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	5 cut(s)	111, 374, 449, 479, 712
AluI	AGCT	5 cut(s)	111, 374, 449, 479, 712
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	54, 308
ApeKI	GCWGC	1 cut(s)	709
Asp700I	GAANNNNTTC	1 cut(s)	518
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	5 cut(s)	55, 147, 269, 308, 718
AsuHPI	GGTGA	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	3 cut(s)	147, 269, 718
AvrII	CCTAGG	1 cut(s)	596
BbsI	GAAGAC	3 cut(s)	164, 521, 651
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	2 cut(s)	466, 548
BciT130I	CCWGG	2 cut(s)	716, 722
BfaI	CTAG	2 cut(s)	317, 597
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	1 cut(s)	710
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	711
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	716, 722
Bme18I	GGWCC	3 cut(s)	147, 269, 718
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	5 cut(s)	55, 147, 269, 308, 718
BmrFI	CCNGG	2 cut(s)	716, 722
BpiI	GAAGAC	3 cut(s)	164, 521, 651
Bpu14I	TTCGAA	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	423, 596
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	620, 767
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	716, 722
BseDI	CCNNGG	2 cut(s)	423, 596
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	620, 767
BseXI	GCAGC	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	56, 310
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	34, 50
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	56, 310
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	272, 414
BspANI	GGCC	2 cut(s)	56, 310
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	620, 767
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	423, 596
BssMI	GATC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	2 cut(s)	716, 722
Bst4CI	ACNGT	2 cut(s)	499, 746
Bst6I	CTCTTC	2 cut(s)	101, 183
BstAUI	TGTACA	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	92, 141
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	716, 722
BstNSI	RCATGY	3 cut(s)	122, 536, 578
BstSCI	CCNGG	2 cut(s)	714, 720
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	3 cut(s)	164, 521, 651
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	56, 310
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	5 cut(s)	55, 147, 269, 308, 718
Csp6I	GTAC	4 cut(s)	464, 562, 578, 675
CviAII	CATG	7 cut(s)	26, 83, 119, 252, 533, 575, 730
CviQI	GTAC	4 cut(s)	464, 562, 578, 675
DdeI	CTNAG	2 cut(s)	92, 141
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	101, 183
EarI	CTCTTC	2 cut(s)	101, 183
Eco130I	CCWWGG	1 cut(s)	596
Eco47I	GGWCC	3 cut(s)	147, 269, 718
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	714, 720
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	7 cut(s)	29, 86, 122, 255, 536, 578, 733
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	7 cut(s)	25, 82, 118, 251, 532, 574, 729
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	710
Fsp4HI	GCNGC	1 cut(s)	710
FspBI	CTAG	2 cut(s)	317, 597
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	710
HaeIII	GGCC	2 cut(s)	56, 310
HapII	CCGG	2 cut(s)	34, 50
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	7 cut(s)	29, 86, 122, 255, 536, 578, 733
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	4, 176
HpaII	CCGG	2 cut(s)	34, 50
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	98, 538, 580, 727
Hpy188I	TCNGA	3 cut(s)	9, 93, 301
Hpy188III	TCNNGA	3 cut(s)	317, 340, 624
Hpy8I	GTNNAC	4 cut(s)	98, 538, 580, 727
HpyAV	CCTTC	3 cut(s)	118, 296, 417
HpyCH4III	ACNGT	2 cut(s)	499, 746
HpyCH4IV	ACGT	3 cut(s)	68, 560, 568
HpyCH4V	TGCA	4 cut(s)	66, 332, 574, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	92, 141
HpySE526I	ACGT	3 cut(s)	68, 560, 568
Hsp92II	CATG	7 cut(s)	29, 86, 122, 255, 536, 578, 733
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	371, 717
Lsp1109I	GCAGC	1 cut(s)	721
MaeI	CTAG	2 cut(s)	317, 597
MaeII	ACGT	3 cut(s)	68, 560, 568
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	9 cut(s)	118, 166, 169, 200, 207, 337, 526, 563, 656
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	542, 609
MlyI	GAGTC	2 cut(s)	13, 185
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	138, 184, 268, 299, 414, 418, 426, 708
MroXI	GAANNNNTTC	1 cut(s)	518
MspI	CCGG	2 cut(s)	34, 50
MspR9I	CCNGG	2 cut(s)	716, 722
MvaI	CCWGG	2 cut(s)	716, 722
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	7 cut(s)	29, 86, 122, 255, 536, 578, 733
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	3 cut(s)	122, 536, 578
NspV	TTCGAA	1 cut(s)	104
PciI	ACATGT	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	711
PleI	GAGTC	2 cut(s)	12, 184
PpsI	GAGTC	2 cut(s)	12, 184
Ppu21I	YACGTR	1 cut(s)	569
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	714, 720
PspGI	CCWGG	2 cut(s)	714, 720
PspPI	GGNCC	5 cut(s)	55, 147, 269, 308, 718
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	4 cut(s)	465, 563, 579, 676
RsaNI	GTAC	4 cut(s)	464, 562, 578, 675
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	710
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	5 cut(s)	55, 147, 269, 308, 718
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	13, 185
ScrFI	CCNGG	2 cut(s)	716, 722
SduI	GDGCHC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	104
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	3 cut(s)	147, 269, 718
Sse9I	AATT	2 cut(s)	542, 609
SsiI	CCGC	2 cut(s)	272, 414
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	2 cut(s)	317, 597
StyD4I	CCNGG	2 cut(s)	714, 720
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	499, 746
TaiI	ACGT	3 cut(s)	71, 563, 571
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	542, 609
TatI	WGTACW	2 cut(s)	463, 577
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	31, 621, 657
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	3 cut(s)	147, 269, 718
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	3 cut(s)	122, 536, 578
XmaJI	CCTAGG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	2 cut(s)	317, 597
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.