Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019016

Physical Location & Seq

Genomic Coordinates Forward (+)

2684671 .. 2686153

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGCTCAATGAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGCACGTTAGCACTGACCCAGGTTGCTCTGAGTGAACATTCGAAGAGCTACCAGCATGTGAAGAGGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGAGGTGACTTACCCAACTGCTACTTCTTCTGTTTATGGCTACCCATATACTCGTGTGCTTCCATGTCCCTCGCAGAATGGACCGCCAAGAGTTGAGCACTTGGTTGTTTCAGAAGGAGGGCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCGAAGCCCGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGGTTCTATCAAGGGAAAAACAGTAAGAGAAGCACAGAAGACTTTCCGGATCACACATGTAGACCAATTTGGTGAAGATGGAACGTATTTTCGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGCTGTTGGACAAACCTGCTGGTACAACAGTTGGAGGAACCACAGACAACATCGAAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

235

Amino Acids

25.93

Weight (kDa)

8.61

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019016)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003761
rosa_laevigata	RLG00000031173
rosa_multiflora	Rmu_co8372245.1_g000001
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033700 Rh5BG032100 Rh5CG036400 Rh5DG032500
rosa_wichuraiana	Rw5G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	510
AciI	CCGC	2 cut(s)	251, 402
AclWI	GGATC	2 cut(s)	327, 521
AfaI	GTAC	3 cut(s)	453, 567, 664
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	3 cut(s)	120, 362, 437
AluI	AGCT	3 cut(s)	120, 362, 437
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	327, 521
Ama87I	CYCGRG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	2 cut(s)	63, 287
Asp700I	GAANNNNTTC	1 cut(s)	506
AspA2I	CCTAGG	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	64, 248, 287
AsuHPI	GGTGA	2 cut(s)	184, 548
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	509, 639
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	2 cut(s)	454, 536
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	2 cut(s)	296, 585
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	343
BlnI	CCTAGG	1 cut(s)	584
BmcAI	AGTACT	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	64, 248, 287
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	509, 639
Bpu14I	TTCGAA	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	90, 411, 584
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	90, 411, 584
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	92, 344
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	65, 289
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	43, 59, 511
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	65, 289
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	8, 267
Bsp13I	TCCGGA	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	319, 343, 513
BspACI	CCGC	2 cut(s)	251, 402
BspANI	GGCC	2 cut(s)	65, 289
BspCNI	CTCAG	2 cut(s)	93, 343
BspEI	TCCGGA	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	2 cut(s)	327, 521
BspQI	GCTCTTC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	90, 411, 584
BssMI	GATC	3 cut(s)	319, 343, 513
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	487, 670
Bst6I	CTCTTC	3 cut(s)	110, 128, 162
BstAUI	TGTACA	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	101, 330
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	322, 346, 516
BstMBI	GATC	3 cut(s)	319, 343, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	3 cut(s)	131, 524, 566
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	404
BstV2I	GAAGAC	2 cut(s)	509, 639
BstX2I	RGATCY	2 cut(s)	319, 343
BstYI	RGATCY	2 cut(s)	319, 343
BsuRI	GGCC	2 cut(s)	65, 289
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	664
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	64, 248, 287
Csp6I	GTAC	3 cut(s)	452, 566, 663
CviAII	CATG	5 cut(s)	35, 128, 231, 521, 563
CviJI	RGCY	9 cut(s)	6, 65, 120, 207, 289, 362, 391, 409, 437
CviKI_1	RGCY	9 cut(s)	6, 65, 120, 207, 289, 362, 391, 409, 437
CviQI	GTAC	3 cut(s)	452, 566, 663
DdeI	CTNAG	2 cut(s)	101, 330
DpnI	GATC	3 cut(s)	321, 345, 515
DpnII	GATC	3 cut(s)	319, 343, 513
Eam1104I	CTCTTC	3 cut(s)	110, 128, 162
EarI	CTCTTC	3 cut(s)	110, 128, 162
Eco130I	CCWWGG	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	5 cut(s)	38, 131, 234, 524, 566
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	34, 127, 230, 520, 562
FblI	GTMKAC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	296, 585
GlaI	GCGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	65, 289
HapII	CCGG	3 cut(s)	43, 59, 511
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	38, 131, 234, 524, 566
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	13, 155
HpaII	CCGG	3 cut(s)	43, 59, 511
HphI	GGTGA	2 cut(s)	184, 548
Hpy166II	GTNNAC	3 cut(s)	107, 526, 568
Hpy188I	TCNGA	3 cut(s)	18, 102, 280
Hpy188III	TCNNGA	4 cut(s)	296, 317, 511, 612
Hpy8I	GTNNAC	3 cut(s)	107, 526, 568
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	487, 670
HpyCH4IV	ACGT	2 cut(s)	77, 548
HpyCH4V	TGCA	4 cut(s)	75, 309, 341, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	101, 330
HpySE526I	ACGT	2 cut(s)	77, 548
Hsp92II	CATG	5 cut(s)	38, 131, 234, 524, 566
HspAI	GCGC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	510
Kzo9I	GATC	3 cut(s)	319, 343, 513
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	359
MaeI	CTAG	2 cut(s)	296, 585
MaeII	ACGT	2 cut(s)	77, 548
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	321, 345, 515
MboI	GATC	3 cut(s)	319, 343, 513
MboII	GAAGA	8 cut(s)	127, 145, 179, 186, 314, 514, 551, 644
MflI	RGATCY	2 cut(s)	319, 343
MhlI	GDGCHC	2 cut(s)	8, 267
MluCI	AATT	2 cut(s)	530, 597
MlyI	GAGTC	2 cut(s)	22, 164
MmeI	TCCRAC	3 cut(s)	422, 627, 652
MroI	TCCGGA	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	506
MspI	CCGG	3 cut(s)	43, 59, 511
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	319, 343, 513
NlaIII	CATG	5 cut(s)	38, 131, 234, 524, 566
NlaIV	GGNNCC	1 cut(s)	679
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	3 cut(s)	131, 524, 566
NspV	TTCGAA	1 cut(s)	113
PciI	ACATGT	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	506
PleI	GAGTC	2 cut(s)	21, 163
PpsI	GAGTC	2 cut(s)	21, 163
PscI	ACATGT	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	3 cut(s)	64, 248, 287
PsuI	RGATCY	2 cut(s)	319, 343
RsaI	GTAC	3 cut(s)	453, 567, 664
RsaNI	GTAC	3 cut(s)	452, 566, 663
SapI	GCTCTTC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	319, 343, 513
Sau96I	GGNCC	3 cut(s)	64, 248, 287
ScaI	AGTACT	1 cut(s)	453
SchI	GAGTC	2 cut(s)	22, 164
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	8, 267
SfcI	CTRYAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	530, 597
SsiI	CCGC	2 cut(s)	251, 402
SspMI	CTAG	2 cut(s)	296, 585
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	487, 670
TaiI	ACGT	2 cut(s)	80, 551
TaqI	TCGA	2 cut(s)	113, 693
TasI	AATT	2 cut(s)	530, 597
TatI	WGTACW	2 cut(s)	451, 565
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	40, 609, 645
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	3 cut(s)	131, 524, 566
XmaJI	CCTAGG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	2 cut(s)	296, 585
ZrmI	AGTACT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.