Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019928

Physical Location & Seq

Genomic Coordinates Forward (+)

3109923 .. 3110893

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATCCACCACTGATTAACGATGCTTCTTTCTTGGCGATGAACCCGACGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGAGGAATCGACGATTTCAAACTGGTTTGTGATTGTTTGTGCAAATTTGGTGTTGGAATTTGGGAAATGGATAGTGAAGACAAATCTTCCAAAAGAACCCAAAAAAAAACTTGAGGAAGAACTTGGCAACCTAAGATTTCGCCCCCTCAATTTAATTTTCTGGTTCCGTCCCTGTTGTTGGCGAGGGTGCCGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

99

Amino Acids

11.44

Weight (kDa)

7.63

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019928)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004721
rosa_samantha	Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	145, 158
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	83, 103, 279
AgsI	TTSAA	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	60
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	74, 94
ApoI	RAATTY	2 cut(s)	145, 158
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	61, 276
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	62, 93
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	6, 266, 290
BmrFI	CCNGG	2 cut(s)	62, 93
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 103, 279
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	83, 103, 279
BseNI	ACTGG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	76, 96
BshNI	GGYRCC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	92, 97
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	83, 103, 279
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	76, 96
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	76, 96
BspLI	GGNNCC	3 cut(s)	6, 266, 290
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	60, 91
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	76, 96
BtgZI	GCGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	55
CviJI	RGCY	4 cut(s)	60, 76, 91, 96
CviKI_1	RGCY	4 cut(s)	60, 76, 91, 96
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	60
FaqI	GGGAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	76, 96
HapII	CCGG	2 cut(s)	92, 97
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	92, 97
Hpy99I	CGWCG	2 cut(s)	52, 115
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	47, 74, 105, 109, 110, 247, 286
LweI	GCATC	1 cut(s)	13
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	179, 190, 230
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	145, 158, 250, 255
MmeI	TCCRAC	2 cut(s)	81, 135
MnlI	CCTC	4 cut(s)	97, 208, 257, 278
MseI	TTAA	2 cut(s)	18, 254
MspI	CCGG	2 cut(s)	92, 97
MspR9I	CCNGG	2 cut(s)	62, 93
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	3 cut(s)	6, 266, 290
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	6, 266, 290
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	18, 254
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	62, 93
SetI	ASST	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	145, 158, 250, 255
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	60, 91
TaqI	TCGA	1 cut(s)	110
TasI	AATT	4 cut(s)	145, 158, 250, 255
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	18, 254
Tru9I	TTAA	2 cut(s)	18, 254
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	145, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.