Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019928

Physical Location & Seq

Genomic Coordinates Forward (+)

648204 .. 650597

Gene Structure 2394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATCCTCCACTGATTAACGACGCTTCTTTCTTGGCGATGAACCCGGCGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGAGGAATCGACGGTAACGGAGCAGAGTGGTGACGGAGCAAATTTGGGTGTAAGTTGTAGATTTCAAACTGTGTATGATATTAGTAGGAAGACCACTTTTGAGAGTGTGGAGCGCTGGCTTAATGAGCTTGCCAGTAAGTTTTTCGGGGGCTTCTTCCATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGTTTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

119

Amino Acids

13.1

Weight (kDa)

4.83

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	69 - 117	4.9e-07	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019928)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004721
rosa_samantha	Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 84
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	83, 103
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	60
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	2 cut(s)	74, 94
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	47, 93
AsuHPI	GGTGA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	47, 93
BfoI	RGCGCY	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	85, 355
BlsI	GCNGC	2 cut(s)	86, 356
Bme1390I	CCNGG	3 cut(s)	47, 62, 93
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	47, 62, 93
BpiI	GAAGAC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	47, 93
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 103
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	83, 103
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	76, 96
BsiSI	CCGG	3 cut(s)	47, 92, 97
BslI	CCNNNNNNNGG	2 cut(s)	83, 103
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	76, 96
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	2 cut(s)	50, 84
BspANI	GGCC	2 cut(s)	76, 96
BspCNI	CTCAG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	115, 172
BstC8I	GCNNGC	3 cut(s)	89, 218, 231
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 226
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	45, 60, 91
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	76, 96
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	11, 304
Cac8I	GCNNGC	3 cut(s)	89, 218, 231
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	260, 277, 290
CviJI	RGCY	7 cut(s)	60, 76, 91, 96, 220, 229, 252
CviKI_1	RGCY	7 cut(s)	60, 76, 91, 96, 220, 229, 252
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	263, 280, 293
FaiI	YATR	6 cut(s)	177, 261, 278, 291, 317, 330
FatI	CATG	3 cut(s)	259, 276, 289
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	85, 355
Fsp4HI	GCNGC	2 cut(s)	85, 355
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	85, 355
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	76, 96
HapII	CCGG	3 cut(s)	47, 92, 97
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	263, 280, 293
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	107, 280
HpaII	CCGG	3 cut(s)	47, 92, 97
HphI	GGTGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	277
Hpy99I	CGWCG	2 cut(s)	26, 115
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	115, 172
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 226
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	263, 280, 293
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	121, 137, 211
LpnPI	CCDG	7 cut(s)	47, 60, 74, 105, 110, 202, 247
Lsp1109I	GCAGC	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	115, 131
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	202, 247
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	18, 97
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	2 cut(s)	18, 222
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	3 cut(s)	47, 92, 97
MspR9I	CCNGG	3 cut(s)	47, 62, 93
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	93, 226
NciI	CCSGG	2 cut(s)	47, 93
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	263, 280, 293
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	295
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	107, 280
PkrI	GCNGC	2 cut(s)	86, 356
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	18, 222
SatI	GCNGC	2 cut(s)	85, 355
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	47, 62, 93
SetI	ASST	2 cut(s)	231, 351
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	50, 84
SspI	AATATT	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	45, 60, 91
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	115, 172
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	107, 280
Tru1I	TTAA	2 cut(s)	18, 222
Tru9I	TTAA	2 cut(s)	18, 222
TscAI	CASTG	2 cut(s)	18, 304
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	56, 338
TspGWI	ACGGA	2 cut(s)	134, 150
TspRI	CASTG	2 cut(s)	18, 304
XapI	RAATTY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.