Rh5CG392600

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019928
Physical Location & Seq
Forward (+)
51688166 .. 51701131
12966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG392600.1

Sequence Viewer

Length: 258 bp
ATGGATCCTCCACTGATTAACGACGCTTCTTTCTTGGCGATCAACCCGACGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGAGGAATCGACGGTAACGGAGCAGAGTGGTGACGGAGCAAATTTGGGTAACCAAGTAGATGCATCACAAATCCAAGAGATGGATTCAGGGGAAAAGCGACTTAATGAGCTTGGTTACAAGCAAGAACTCAGAAGAGAGATGGTAATTGGCACCTAA

Protein Analysis

85

Amino Acids

9.28

Weight (kDa)

4.16

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019928)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0004721
rosa_samantha Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 181
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 83, 103, 181
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 74, 94
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 143
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 251
BccI CCATC 2 cut(s) 175, 235
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 62
BcnI CCSGG 1 cut(s) 93
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 62, 93
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 6, 253
BmrFI CCNGG 2 cut(s) 62, 93
BmsI GCATC 2 cut(s) 151, 173
BpuMI CCSGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 103, 181
Bse118I RCCGGY 1 cut(s) 96
BseBI CCWGG 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 83, 103, 181
BseMII CTCAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 76, 96
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 92, 97
BslI CCNNNNNNNGG 3 cut(s) 83, 103, 181
BsnI GGCC 2 cut(s) 76, 96
Bsp143I GATC 2 cut(s) 4, 39
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 76, 96
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 6, 253
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssMI GATC 2 cut(s) 4, 39
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 230
BstEII GGTNACC 1 cut(s) 149
BstKTI GATC 2 cut(s) 7, 42
BstMBI GATC 2 cut(s) 4, 39
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 60, 91
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 76, 96
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 5 cut(s) 60, 76, 91, 96, 211
CviKI_1 RGCY 5 cut(s) 60, 76, 91, 96, 211
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 6, 41
DpnII GATC 2 cut(s) 4, 39
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 2 cut(s) 76, 96
HapII CCGG 2 cut(s) 92, 97
HgaI GACGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 107, 185
HpaII CCGG 2 cut(s) 92, 97
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 233
Hpy99I CGWCG 3 cut(s) 26, 52, 115
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 230
Kzo9I GATC 2 cut(s) 4, 39
LmnI GCTCC 2 cut(s) 121, 137
LpnPI CCDG 5 cut(s) 47, 74, 105, 110, 174
LweI GCATC 2 cut(s) 151, 173
MaeIII GTNAC 4 cut(s) 115, 131, 149, 215
MalI GATC 2 cut(s) 6, 41
MboI GATC 2 cut(s) 4, 39
MboII GAAGA 1 cut(s) 246
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 142, 246
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 18, 97
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 2 cut(s) 18, 204
MspI CCGG 2 cut(s) 92, 97
MspR9I CCNGG 2 cut(s) 62, 93
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 93
NdeII GATC 2 cut(s) 4, 39
NlaIV GGNNCC 2 cut(s) 6, 253
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 166
PfeI GAWTC 2 cut(s) 107, 185
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 6, 253
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 18, 204
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 4, 39
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 62, 93
SetI ASST 2 cut(s) 213, 257
SfaNI GCATC 2 cut(s) 151, 173
Sse9I AATT 2 cut(s) 142, 246
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 60, 91
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 142, 246
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 107, 185
Tru1I TTAA 2 cut(s) 18, 204
Tru9I TTAA 2 cut(s) 18, 204
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspGWI ACGGA 2 cut(s) 134, 150
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 181
XapI RAATTY 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.