Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019928

Physical Location & Seq

Genomic Coordinates Reverse (-)

29138773 .. 29145570

Gene Structure 6798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGATCCTCCCCTGATTAACGACCCTTCTTTCTTGGAGATGAACCCGGCGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGTCGCTCCGGTTGGAGGAATCGAGGGTAACGAAGCAGAGTGGTAACAGAGCAAATTTGAGTCTTCGCTTGGCTAATGAGGACCTTGATCACTGTGGTATAGAAGTAAGGCTTGAAGGTGTTTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

72

Amino Acids

8.01

Weight (kDa)

4.49

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019928)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004721
rosa_samantha	Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 84
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	83, 103
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	60
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	47, 62
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	47, 62
BpiI	GAAGAC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 103
BseBI	CCWGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	83, 103
BshFI	GGCC	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	47, 97
BslI	CCNNNNNNNGG	2 cut(s)	83, 103
BsnI	GGCC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	4, 175
BspACI	CCGC	2 cut(s)	50, 84
BspANI	GGCC	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	2 cut(s)	4, 175
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	182
BstKTI	GATC	2 cut(s)	7, 178
BstMBI	GATC	2 cut(s)	4, 175
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	45, 60
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	55
CviJI	RGCY	4 cut(s)	60, 76, 161, 199
CviKI_1	RGCY	4 cut(s)	60, 76, 161, 199
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	2 cut(s)	6, 177
DpnII	GATC	2 cut(s)	4, 175
EaeI	YGGCCR	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	60
FaiI	YATR	1 cut(s)	188
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	47, 97
HinfI	GANTC	3 cut(s)	89, 107, 148
HpaII	CCGG	2 cut(s)	47, 97
HpyAV	CCTTC	2 cut(s)	36, 197
HpyCH4III	ACNGT	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	4, 175
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	26, 47, 60, 74, 110
MaeIII	GTNAC	2 cut(s)	115, 131
MalI	GATC	2 cut(s)	6, 177
MboI	GATC	2 cut(s)	4, 175
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	98, 157
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	18, 97, 105, 160
MseI	TTAA	1 cut(s)	18
MspI	CCGG	2 cut(s)	47, 97
MspR9I	CCNGG	2 cut(s)	47, 62
MvaI	CCWGG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	4, 175
NlaIV	GGNNCC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	2 cut(s)	97, 156
PpsI	GAGTC	2 cut(s)	97, 156
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	4, 175
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	98, 157
ScrFI	CCNGG	2 cut(s)	47, 62
SetI	ASST	2 cut(s)	174, 208
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	50, 84
StyD4I	CCNGG	2 cut(s)	45, 60
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.