Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019928

Physical Location & Seq

Genomic Coordinates Reverse (-)

40828399 .. 40829830

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGAACCCGGCGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGAGGAATCGACGGTAACGGAGCTGAGTGGTGACGGAGCAAATTTGGGTTCATCACCACCAAAGCTGATTGGCGTTCACATGAAGAACATCGATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

53

Amino Acids

5.6

Weight (kDa)

4.75

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019928)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004721
rosa_samantha	Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 45
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	44, 64
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	85, 127
AluI	AGCT	2 cut(s)	85, 127
AoxI	GGCC	2 cut(s)	35, 55
ApoI	RAATTY	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	8, 54
AsuHPI	GGTGA	2 cut(s)	104, 108
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	8, 54
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	8, 23, 54
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	3 cut(s)	8, 23, 54
BpuMI	CCSGG	2 cut(s)	8, 54
Bsa29I	ATCGAT	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 64
Bse118I	RCCGGY	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	44, 64
BseMII	CTCAG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	37, 57
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	8, 53, 58
BslI	CCNNNNNNNGG	2 cut(s)	44, 64
BsnI	GGCC	2 cut(s)	37, 57
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	11, 45
BspANI	GGCC	2 cut(s)	37, 57
BspCNI	CTCAG	1 cut(s)	78
BspDI	ATCGAT	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	86
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	6, 21, 52
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	37, 57
BsuTUI	ATCGAT	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	6 cut(s)	21, 37, 52, 57, 85, 127
CviKI_1	RGCY	6 cut(s)	21, 37, 52, 57, 85, 127
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	37, 57
HapII	CCGG	3 cut(s)	8, 53, 58
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	3 cut(s)	8, 53, 58
HphI	GGTGA	2 cut(s)	104, 108
Hpy166II	GTNNAC	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	82, 98
LpnPI	CCDG	5 cut(s)	8, 21, 35, 66, 71
MaeIII	GTNAC	2 cut(s)	76, 92
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	1 cut(s)	58
MspI	CCGG	3 cut(s)	8, 53, 58
MspR9I	CCNGG	3 cut(s)	8, 23, 54
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	54
NciI	CCSGG	2 cut(s)	8, 54
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	47
Ple19I	CGATCG	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	8, 23, 54
SetI	ASST	2 cut(s)	87, 129
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	11, 45
StyD4I	CCNGG	3 cut(s)	6, 21, 52
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	71, 153
TasI	AATT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	17, 102, 158
TspGWI	ACGGA	2 cut(s)	95, 111
XapI	RAATTY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.