Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019928

Physical Location & Seq

Genomic Coordinates Forward (+)

561135 .. 564048

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATCCTCCACTGATTAACGACGCTTCTTTCTTGGCGATGAACCCGGCGGGGTACAGCCTGGCAGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGAGGAATCGACGGTAACGGAGCAGAGTGGTGACGGAGCAAATTTGGGTGGGCTTCTTCCATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTGCTGTGTCTATGATCCTGCTACTACTGCTGATTCTCAGGCAAACAAGGAAGCAGCTGATGAACGTTCTGTTTTTGTTGGCAATAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

99

Amino Acids

10.62

Weight (kDa)

4.14

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019928)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004721
rosa_samantha	Rh1CG257200 Rh3CG287800 Rh4BG241600 Rh5CG392600 Rh6CG004900 Rh6DG005000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 84
AclI	AACGTT	1 cut(s)	271
AclWI	GGATC	2 cut(s)	12, 215
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	83, 103
AjnI	CCWGG	1 cut(s)	60
AloI	GAACNNNNNNTCC	2 cut(s)	157, 189
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	2 cut(s)	12, 215
AoxI	GGCC	2 cut(s)	74, 94
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	47, 93
AsuHPI	GGTGA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	47, 93
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	85, 261
BlsI	GCNGC	2 cut(s)	86, 262
Bme1390I	CCNGG	3 cut(s)	47, 62, 93
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	47, 62, 93
BpuMI	CCSGG	2 cut(s)	47, 93
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 103
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	83, 103
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	184, 257
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	76, 96
BsiSI	CCGG	3 cut(s)	47, 92, 97
BslI	CCNNNNNNNGG	2 cut(s)	83, 103
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	76, 96
Bsp143I	GATC	2 cut(s)	4, 220
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	50, 84
BspANI	GGCC	2 cut(s)	76, 96
BspCNI	CTCAG	2 cut(s)	183, 256
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 215
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	4, 220
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	115, 297
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	170, 243
BstDSI	CCRYGG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	7, 223
BstMBI	GATC	2 cut(s)	4, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 233
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	45, 60, 91
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	76, 96
BtgI	CCRYGG	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	11, 206
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	162, 179, 192
CviJI	RGCY	6 cut(s)	60, 76, 91, 96, 154, 263
CviKI_1	RGCY	6 cut(s)	60, 76, 91, 96, 154, 263
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	170, 243
DpnI	GATC	2 cut(s)	6, 222
DpnII	GATC	2 cut(s)	4, 220
EaeI	YGGCCR	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	165, 182, 195
FaiI	YATR	4 cut(s)	163, 180, 193, 219
FatI	CATG	3 cut(s)	161, 178, 191
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	85, 261
Fsp4HI	GCNGC	2 cut(s)	85, 261
GluI	GCNGC	2 cut(s)	85, 261
HaeIII	GGCC	2 cut(s)	76, 96
HapII	CCGG	3 cut(s)	47, 92, 97
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	165, 182, 195
HinfI	GANTC	3 cut(s)	107, 182, 239
HpaII	CCGG	3 cut(s)	47, 92, 97
HphI	GGTGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	179
Hpy99I	CGWCG	2 cut(s)	26, 115
HpyCH4III	ACNGT	2 cut(s)	115, 297
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 233
HpyF3I	CTNAG	2 cut(s)	170, 243
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	165, 182, 195
Kzo9I	GATC	2 cut(s)	4, 220
LmnI	GCTCC	2 cut(s)	121, 137
LpnPI	CCDG	7 cut(s)	47, 60, 74, 105, 110, 230, 237
Lsp1109I	GCAGC	1 cut(s)	272
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	115, 131
MalI	GATC	2 cut(s)	6, 222
MboI	GATC	2 cut(s)	4, 220
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	18, 97
Mph1103I	ATGCAT	1 cut(s)	197
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	3 cut(s)	47, 92, 97
MspR9I	CCNGG	3 cut(s)	47, 62, 93
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	93, 233
NciI	CCSGG	2 cut(s)	47, 93
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	4, 220
NlaIII	CATG	3 cut(s)	165, 182, 195
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	197
PagI	TCATGA	1 cut(s)	178
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	107, 182, 239
PkrI	GCNGC	2 cut(s)	86, 262
Psp1406I	AACGTT	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	85, 261
Sau3AI	GATC	2 cut(s)	4, 220
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	47, 62, 93
SetI	ASST	2 cut(s)	265, 274
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	50, 84
StyD4I	CCNGG	3 cut(s)	45, 60, 91
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	115, 297
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	107, 182, 239
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	18, 206
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	56, 282
TspGWI	ACGGA	2 cut(s)	134, 150
TspRI	CASTG	2 cut(s)	18, 206
XapI	RAATTY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.