RchiOBHm_Chr5g0012361

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016782
Physical Location & Seq
Forward (+)
8314224 .. 8315744
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29294

Sequence Viewer

Length: 885 bp
ATGGAGATGGAAAAGAAGGTTGAGTTTGTTGAAGGAAAGGTGGATTGGAAGGGAAGGACAGCTGTGAAACATAAACATGGAGGAATGAGAACTGCTTTTCTCATACTTGCTACATTTGGTTTTGAGAACATGGCAACTTTGGCTTTGGCGGTGAACTTGGTTACATACTTCAATGGGGTGATGCATTTTGAAATATCTGATGCCGCTAACCAACTTACCAACTTCGCCGGCACTGGTTATATTCTCTCCATTATCATGGCCATCCTTGCAGACACATTCTTCGGCCGATTCAAAACCCTTCTCATTTCAGCTTGCTTCGAGTTCGTCGGGCTAGGATTACTAACCGTGCAAGCTCACTATCCAAGTCTCCAGCCACCGGTCTGTAACGTGTTTGATCCAACTTCTTCTTGCGAGAAAGTTACTGGTGGCAATGCTGCTTTGCTTTTCATTGCTCTCTACATATTGGCAGCAGGAGCTGCAGGAGTCAAAGCTACCTTGCCATCACATGGTGCAGATCAATTTGATGAAAAAGATCCAAAAGAGACGAGGCAGATGTCGAGCTTCTTCAACCTGCTCTTACTAGCAGTATGTCTGGGTGGTGTGGTCAGCCTAACACTAATTGTGTGGATCCAAGACAATAAAGGATGGGATTGGGGATTTGGGATTTCTACAATCGCCATGTTCTTGGGTGTCGTCGTCTTCTTTTCAGGATTGCCTATGTACCGGATACAAGCTATTCGAGGAACTAGTGCAATAATCGAAATTATACAGTTAGAGCCTACAGTGAATCTAAGAGGAAGAAGACGGCTCCATGAAGATATATGCTTAATGAATACTTCCAACTATACTCTGTTTCTTCAGAAAAATTACTTACATCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

294

Amino Acids

32.49

Weight (kDa)

7.69

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 97 - 260 3.3e-36 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06770
malus_domestica MD05G1293900.v1.1 MD10G1271800.v1.1
prunus_persica Prupe.4G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0012361
rosa_laevigata RLG00000031907
rosa_multiflora Rmu_sc0003469.1_g000017
rosa_roxburghii Rroxscaffold_1G00064300
rosa_rugosa Rorug05G0000700
rosa_samantha Rh5AG094900 Rh5BG091200 Rh5CG104200 Rh5DG090600
rosa_wichuraiana Rw5G008300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 579
AccB7I CCANNNNNTGG 1 cut(s) 506
AciI CCGC 2 cut(s) 149, 204
AclWI GGATC 4 cut(s) 389, 527, 622, 635
AcoI YGGCCR 2 cut(s) 258, 283
AcuI CTGAAG 1 cut(s) 842
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 376, 506
AflIII ACRYGT 1 cut(s) 387
AgeI ACCGGT 1 cut(s) 376
AgsI TTSAA 5 cut(s) 32, 172, 191, 292, 568
AhlI ACTAGT 1 cut(s) 746
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 7 cut(s) 62, 311, 353, 476, 491, 561, 734
AluI AGCT 7 cut(s) 62, 311, 353, 476, 491, 561, 734
Alw26I GTCTC 2 cut(s) 371, 536
AlwI GGATC 4 cut(s) 389, 527, 622, 635
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 2 cut(s) 258, 283
ApeKI GCWGC 3 cut(s) 434, 467, 476
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 163, 190
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 691, 808
BbvI GCAGC 3 cut(s) 421, 463, 479
BccI CCATC 3 cut(s) 269, 508, 639
BceAI ACGGC 1 cut(s) 821
BciVI GTATCC 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 371, 536
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 3 cut(s) 332, 581, 747
BfmI CTRYAG 2 cut(s) 477, 780
BfuAI ACCTGC 1 cut(s) 579
BfuI GTATCC 1 cut(s) 720
BisI GCNGC 4 cut(s) 204, 435, 468, 477
BlsI GCNGC 4 cut(s) 205, 436, 469, 478
BmiI GGNNCC 2 cut(s) 629, 809
BmsI GCATC 2 cut(s) 171, 190
BpiI GAAGAC 2 cut(s) 691, 808
BpmI CTGGAG 1 cut(s) 353
BsaWI WCCGGW 2 cut(s) 376, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 506
Bse118I RCCGGY 2 cut(s) 227, 376
Bse1I ACTGG 2 cut(s) 238, 427
Bse3DI GCAATG 2 cut(s) 436, 447
BseGI GGATG 2 cut(s) 261, 650
BseLI CCNNNNNNNGG 2 cut(s) 376, 506
BseMI GCAATG 2 cut(s) 436, 447
BseNI ACTGG 2 cut(s) 238, 427
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 3 cut(s) 421, 463, 479
BsgI GTGCAG 1 cut(s) 531
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 260, 285
BshTI ACCGGT 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 228, 377, 724
BslI CCNNNNNNNGG 2 cut(s) 376, 506
BsmAI GTCTC 2 cut(s) 371, 536
BsmBI CGTCTC 1 cut(s) 536
BsnI GGCC 2 cut(s) 260, 285
Bsp143I GATC 4 cut(s) 394, 514, 532, 627
BspACI CCGC 2 cut(s) 149, 204
BspANI GGCC 2 cut(s) 260, 285
BspLI GGNNCC 2 cut(s) 629, 809
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 579
BspPI GGATC 4 cut(s) 389, 527, 622, 635
BsrDI GCAATG 2 cut(s) 436, 447
BsrFI RCCGGY 2 cut(s) 227, 376
BsrI ACTGG 2 cut(s) 238, 427
BssAI RCCGGY 2 cut(s) 227, 376
BssMI GATC 4 cut(s) 394, 514, 532, 627
Bst4CI ACNGT 3 cut(s) 346, 771, 784
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 229, 313, 351
BstDEI CTNAG 1 cut(s) 791
BstF5I GGATG 2 cut(s) 261, 650
BstKTI GATC 4 cut(s) 397, 517, 535, 630
BstMAI GTCTC 2 cut(s) 371, 536
BstMBI GATC 4 cut(s) 394, 514, 532, 627
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 4 cut(s) 140, 266, 473, 476
BstSFI CTRYAG 2 cut(s) 477, 780
BstV1I GCAGC 3 cut(s) 421, 463, 479
BstV2I GAAGAC 2 cut(s) 691, 808
BstX2I RGATCY 2 cut(s) 532, 627
BstXI CCANNNNNNTGG 2 cut(s) 256, 685
BstYI RGATCY 2 cut(s) 532, 627
BstZI CGGCCG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 2 cut(s) 260, 285
BtsCI GGATG 2 cut(s) 261, 650
BtsIMutI CAGTG 2 cut(s) 231, 789
BveI ACCTGC 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 229, 313, 351
CaiI CAGNNNCTG 1 cut(s) 476
Cfr10I RCCGGY 2 cut(s) 227, 376
Csp6I GTAC 1 cut(s) 721
CspAI ACCGGT 1 cut(s) 376
CviAII CATG 6 cut(s) 77, 130, 256, 506, 679, 812
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 1 cut(s) 791
DpnI GATC 4 cut(s) 396, 516, 534, 629
DpnII GATC 4 cut(s) 394, 514, 532, 627
DraIII CACNNNGTG 1 cut(s) 509
EaeI YGGCCR 2 cut(s) 258, 283
EagI CGGCCG 1 cut(s) 283
EclXI CGGCCG 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 842
EcoT22I ATGCAT 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 6 cut(s) 80, 133, 259, 509, 682, 815
FatI CATG 6 cut(s) 76, 129, 255, 505, 678, 811
Fnu4HI GCNGC 4 cut(s) 204, 435, 468, 477
FokI GGATG 2 cut(s) 248, 657
Fsp4HI GCNGC 4 cut(s) 204, 435, 468, 477
FspBI CTAG 3 cut(s) 332, 581, 747
GluI GCNGC 4 cut(s) 204, 435, 468, 477
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 2 cut(s) 260, 285
HapII CCGG 3 cut(s) 228, 377, 724
Hin1II CATG 6 cut(s) 80, 133, 259, 509, 682, 815
HinfI GANTC 3 cut(s) 288, 483, 787
HpaII CCGG 3 cut(s) 228, 377, 724
HphI GGTGA 2 cut(s) 163, 190
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 199, 861
Hpy188III TCNNGA 1 cut(s) 708
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 329, 698
HpyAV CCTTC 5 cut(s) 10, 26, 43, 48, 308
HpyCH4III ACNGT 3 cut(s) 346, 771, 784
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 6 cut(s) 184, 269, 349, 479, 512, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 266, 473, 476
HpyF3I CTNAG 1 cut(s) 791
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 6 cut(s) 80, 133, 259, 509, 682, 815
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 394, 514, 532, 627
LmnI GCTCC 2 cut(s) 473, 813
Lsp1109I GCAGC 3 cut(s) 421, 463, 479
LweI GCATC 2 cut(s) 171, 190
MaeI CTAG 3 cut(s) 332, 581, 747
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 160, 383, 418
MalI GATC 4 cut(s) 396, 516, 534, 629
MboI GATC 4 cut(s) 394, 514, 532, 627
MboII GAAGA 8 cut(s) 271, 396, 556, 691, 810, 813, 827, 848
MflI RGATCY 2 cut(s) 532, 627
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 4 cut(s) 518, 618, 762, 865
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 2 cut(s) 422, 864
MnlI CCTC 4 cut(s) 74, 540, 734, 788
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 827
MslI CAYNNNNRTG 2 cut(s) 75, 254
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 228, 377, 724
MwoI GCNNNNNNNGC 4 cut(s) 140, 266, 473, 476
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 4 cut(s) 394, 514, 532, 627
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 6 cut(s) 80, 133, 259, 509, 682, 815
NlaIV GGNNCC 2 cut(s) 629, 809
NsiI ATGCAT 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 288, 787
PflMI CCANNNNNTGG 1 cut(s) 506
PinAI ACCGGT 1 cut(s) 376
PkrI GCNGC 4 cut(s) 205, 436, 469, 478
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 629, 809
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 532, 627
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 2 cut(s) 75, 254
SaqAI TTAA 1 cut(s) 827
SatI GCNGC 4 cut(s) 204, 435, 468, 477
Sau3AI GATC 4 cut(s) 394, 514, 532, 627
SchI GAGTC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 171, 190
SfcI CTRYAG 2 cut(s) 477, 780
SmiMI CAYNNNNRTG 2 cut(s) 75, 254
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 4 cut(s) 518, 618, 762, 865
SsiI CCGC 2 cut(s) 149, 204
SspMI CTAG 3 cut(s) 332, 581, 747
TaaI ACNGT 3 cut(s) 346, 771, 784
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 318, 557, 739, 759
TasI AATT 4 cut(s) 518, 618, 762, 865
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 288, 787
Tru1I TTAA 1 cut(s) 827
Tru9I TTAA 1 cut(s) 827
TscAI CASTG 2 cut(s) 238, 789
TseI GCWGC 3 cut(s) 434, 467, 476
TspDTI ATGAA 4 cut(s) 436, 540, 828, 845
TspRI CASTG 2 cut(s) 238, 789
Van91I CCANNNNNTGG 1 cut(s) 506
XspI CTAG 3 cut(s) 332, 581, 747
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.