Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010470

Physical Location & Seq

Genomic Coordinates Forward (+)

10913835 .. 10914218

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGGACTCAGATGGAGTCCTCAACTTCGACTTCGAGGGCGGCCTCGACGCCACTGCCGACGCCGGACCCATCCACACCGGCCTGGCCTCCAACGCCCCGATCCAGTCCGACTCCCTCGTCGCGCAGTCCAACAACCAGGCCTCCGCCGCGCCACAACCCGACCCGAATGTCAACCCCTCGGGCCAGAAGAGCTTCCGGCAAACGGTGTCTCGTCACTGGCTTCGCAGCCTCTGTATGAAGGGCGAGGCTTGCGGCTTCCTTCACCAATACGACAAGTCACGCATGCCGGTGTGCCGCTTCTTCCGTATGTACGGCGAGTGTAGGGAGCAGGATTGCGTCTATAAGCACACCAACGAGGACATTAAAGAGTGTAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010363 GO:0010467 GO:0010468 GO:0010646 GO:0010941 GO:0010942 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0023051 GO:0031123 GO:0031124 GO:0031323 GO:0031347 GO:0031349 GO:0031440 GO:0031974 GO:0031981 GO:0032991 GO:0034052 GO:0034641 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050684 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1900363 GO:1901360 GO:1901363 GO:1903311 GO:2000031 GO:2001023 GO:2001038

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

YTH

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

5.23

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30460 AT1G30460 AT1G30460
fragaria_vesca	FvH4_3g09980
malus_domestica	MD05G1274200.v1.1 MD10G1253900.v1.1
prunus_persica	Prupe.4G089500_v2.0.a1
pyrus_communis	pycom05g25560 pycom10g20950
rosa_chinensis	RchiOBHm_Chr5g0015731 RchiOBHm_Chr5g0015861
rosa_laevigata	RLG00000032226
rosa_multiflora	Rmu_sc0000012.1_g000002
rosa_roxburghii	Rroxscaffold_1G00060740
rosa_rugosa	Rorug05G0029600
rosa_samantha	Rh5AG123200 Rh5BG122100 Rh5CG132200 Rh5CG133300 Rh5DG121500
rosa_wichuraiana	Rw5G010630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 170
AccII	CGCG	2 cut(s)	125, 152
AciI	CCGC	5 cut(s)	42, 147, 150, 255, 298
AclWI	GGATC	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	51, 63
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	84, 138
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	5 cut(s)	43, 82, 87, 141, 184
ApeKI	GCWGC	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	127, 154
AspS9I	GGNCC	2 cut(s)	68, 184
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	8, 80
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	86, 140
BcoDI	GTCTC	1 cut(s)	216
BisI	GCNGC	5 cut(s)	43, 150, 229, 256, 298
BlsI	GCNGC	5 cut(s)	44, 151, 230, 257, 299
Bme1390I	CCNGG	2 cut(s)	86, 140
Bme18I	GGWCC	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	68, 184
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	86, 140
BsaHI	GRCGYC	2 cut(s)	51, 63
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	2 cut(s)	80, 289
Bse1I	ACTGG	2 cut(s)	106, 224
BseBI	CCWGG	2 cut(s)	86, 140
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	106, 224
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	125, 152
BshFI	GGCC	5 cut(s)	45, 84, 89, 143, 186
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	4 cut(s)	66, 81, 199, 290
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	5 cut(s)	45, 84, 89, 143, 186
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	5 cut(s)	42, 147, 150, 255, 298
BspANI	GGCC	5 cut(s)	45, 84, 89, 143, 186
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	125, 152
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	80, 289
BsrI	ACTGG	2 cut(s)	106, 224
BssAI	RCCGGY	2 cut(s)	80, 289
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	2 cut(s)	51, 63
Bst2UI	CCWGG	2 cut(s)	86, 140
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	2 cut(s)	51, 63
BstC8I	GCNNGC	2 cut(s)	253, 287
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	125, 152
BstHHI	GCGC	2 cut(s)	127, 154
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 149, 192, 252
BstNI	CCWGG	2 cut(s)	86, 140
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	84, 138
BstUI	CGCG	2 cut(s)	125, 152
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	45, 84, 89, 143, 186
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 217
Cac8I	GCNNGC	2 cut(s)	253, 287
CaiI	CAGNNNCTG	1 cut(s)	234
CfoI	GCGC	2 cut(s)	127, 154
Cfr10I	RCCGGY	2 cut(s)	80, 289
Cfr13I	GGNCC	2 cut(s)	68, 184
CseI	GACGC	3 cut(s)	59, 71, 328
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	286
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DrdI	GACNNNNNNGTC	2 cut(s)	119, 170
DseDI	GACNNNNNNGTC	2 cut(s)	119, 170
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	84, 138
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	239, 287, 311, 345, 380
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	43, 150, 229, 256, 298
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	43, 150, 229, 256, 298
GlaI	GCGC	2 cut(s)	126, 153
GluI	GCNGC	5 cut(s)	43, 150, 229, 256, 298
HaeIII	GGCC	5 cut(s)	45, 84, 89, 143, 186
HapII	CCGG	4 cut(s)	66, 81, 199, 290
HgaI	GACGC	3 cut(s)	59, 71, 328
HhaI	GCGC	2 cut(s)	127, 154
Hin1I	GRCGYC	2 cut(s)	51, 63
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	125, 152
HinP1I	GCGC	2 cut(s)	125, 152
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	8, 18, 113
HpaII	CCGG	4 cut(s)	66, 81, 199, 290
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	13, 112
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	53, 65, 125
HpyAV	CCTTC	2 cut(s)	235, 272
HpyCH4III	ACNGT	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 149, 192, 252
HpyF3I	CTNAG	1 cut(s)	10
Hsp92I	GRCGYC	2 cut(s)	51, 63
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	125, 152
Kzo9I	GATC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	215, 279
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	202, 295
MlyI	GAGTC	3 cut(s)	2, 27, 107
MmeI	TCCRAC	3 cut(s)	117, 135, 156
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	4 cut(s)	66, 81, 199, 290
MspR9I	CCNGG	2 cut(s)	86, 140
MvaI	CCWGG	2 cut(s)	86, 140
MvnI	CGCG	2 cut(s)	125, 152
MwoI	GCNNNNNNNGC	4 cut(s)	95, 149, 192, 252
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	215, 279
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	44, 151, 230, 257, 299
PleI	GAGTC	3 cut(s)	2, 26, 107
PpsI	GAGTC	3 cut(s)	2, 26, 107
Psp6I	CCWGG	2 cut(s)	84, 138
PspGI	CCWGG	2 cut(s)	84, 138
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	68, 184
PstNI	CAGNNNCTG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	5 cut(s)	43, 150, 229, 256, 298
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	68, 184
SchI	GAGTC	3 cut(s)	2, 27, 107
ScrFI	CCNGG	2 cut(s)	86, 140
SetI	ASST	1 cut(s)	197
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	289
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	5 cut(s)	42, 147, 150, 255, 298
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	84, 138
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	30, 36, 48
TauI	GCSGC	4 cut(s)	45, 152, 258, 300
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	61, 224
TseFI	GTSAC	2 cut(s)	215, 279
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	2 cut(s)	215, 279
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	61, 224
VpaK11BI	GGWCC	1 cut(s)	68
XceI	RCATGY	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.