RchiOBHm_Chr5g0027411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019944
Physical Location & Seq
Reverse (-)
21384493 .. 21385245
753 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30696

Sequence Viewer

Length: 669 bp
ATGGGCATGGCCGGTTATCATCTCAGCTGCAACAAGATGCTCTTCTTTAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCATCCACCTCACCCCTTACTTCCCTTTCGTCACCGGCTTCGTCACCATCGTCTCCTCCGTCGTCGTTTTCCAGAACCGCCACGACTCCTGCCTCTCCCACCTCCACGACCTCGTTTGGGACGTCACTCACTCCCCCGATTCTGATCCCCCCCCCTCGATTACCACAAGCTTGGCCTCGGCCGATTCGACGCCGCCGATCTCCTCAACGGATCTTGGGTCGTCGTTGCCGGCGACTCTTAGGCCAGGCTCGTCGCTGACTTGCTGCTCGCTCTGGTTCTCGATTGAGAGTGAATGGACACGACTTCTTCTGTTCAAGCTTTATGCTCTCAATTTGACTTCTCTGGTTGCGGGTTTCAACCGGAATCGAAACTACCCAGATGTCTTGGTCATGGGTTCTGGTTTGTGGCATATGCATATGTTTCATTTCACTAATGCATCTTGTGCTTCTTTGCAATCATTGAGGACTCATGCTGCTTTTTTGGTCTCCTCATCTAAGCAGCATGAAGAAGTAGTAACAGGGTCCGTGCTAGCCACAGAGAGAGAGAGAACCCAAAAAGGAAAAAAGAAAACTCTGATTTTTTTAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.38

Weight (kDa)

7.76

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 4 cut(s) 51, 157, 272, 428
AclWI GGATC 2 cut(s) 218, 297
AcoI YGGCCR 2 cut(s) 9, 258
AcyI GRCGYC 3 cut(s) 54, 201, 269
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 394, 436
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 27, 249, 397
AluI AGCT 3 cut(s) 27, 249, 397
Alw26I GTCTC 2 cut(s) 136, 568
AlwI GGATC 2 cut(s) 218, 297
AoxI GGCC 4 cut(s) 9, 252, 258, 320
ApeKI GCWGC 4 cut(s) 27, 342, 551, 577
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 600
AsuHPI GGTGA 3 cut(s) 82, 103, 115
AsuNHI GCTAGC 1 cut(s) 607
AvaII GGWCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 14, 329, 538, 589
BccI CCATC 2 cut(s) 83, 134
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 136, 568
BfaI CTAG 1 cut(s) 608
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 6 cut(s) 28, 52, 272, 343, 552, 578
BlsI GCNGC 6 cut(s) 29, 53, 273, 344, 553, 579
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 2 cut(s) 55, 601
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 3 cut(s) 27, 90, 524
BmtI GCTAGC 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 3 cut(s) 54, 201, 269
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 3 cut(s) 11, 113, 307
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 3 cut(s) 124, 271, 556
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 14, 329, 538, 589
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 11, 254, 260, 322
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 12, 114, 308, 439
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 136, 568
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 4 cut(s) 11, 254, 260, 322
Bso31I GGTCTC 1 cut(s) 568
Bsp143I GATC 3 cut(s) 223, 276, 289
BspACI CCGC 4 cut(s) 51, 157, 272, 428
BspANI GGCC 4 cut(s) 11, 254, 260, 322
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 55, 601
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 2 cut(s) 218, 297
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 568
BsrFI RCCGGY 3 cut(s) 11, 113, 307
BssAI RCCGGY 3 cut(s) 11, 113, 307
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 223, 276, 289
BssNI GRCGYC 3 cut(s) 54, 201, 269
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 47, 65
BstACI GRCGYC 3 cut(s) 54, 201, 269
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 309, 347, 609
BstDEI CTNAG 3 cut(s) 23, 317, 573
BstF5I GGATG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 226, 279, 292
BstMAI GTCTC 2 cut(s) 136, 568
BstMBI GATC 3 cut(s) 223, 276, 289
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 14, 329, 538, 589
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 4 cut(s) 11, 254, 260, 322
BtsCI GGATG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 309, 347, 609
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 3 cut(s) 11, 113, 307
Cfr13I GGNCC 1 cut(s) 600
CseI GACGC 1 cut(s) 277
CviAII CATG 4 cut(s) 7, 469, 548, 581
DdeI CTNAG 3 cut(s) 23, 317, 573
DinI GGCGCC 1 cut(s) 55
DpnI GATC 3 cut(s) 225, 278, 291
DpnII GATC 3 cut(s) 223, 276, 289
EaeI YGGCCR 2 cut(s) 9, 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 47, 65
EarI CTCTTC 2 cut(s) 47, 65
EclXI CGGCCG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 600
Eco52I CGGCCG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 322
EcoT22I ATGCAT 2 cut(s) 495, 517
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 4 cut(s) 10, 472, 551, 584
FaiI YATR 9 cut(s) 8, 402, 470, 489, 491, 495, 497, 549, 582
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 6, 468, 547, 580
FauI CCCGC 1 cut(s) 421
FauNDI CATATG 2 cut(s) 489, 495
Fnu4HI GCNGC 6 cut(s) 28, 52, 272, 343, 552, 578
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 6 cut(s) 28, 52, 272, 343, 552, 578
FspBI CTAG 1 cut(s) 608
GlaI GCGC 1 cut(s) 55
GluI GCNGC 6 cut(s) 28, 52, 272, 343, 552, 578
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 4 cut(s) 11, 254, 260, 322
HapII CCGG 4 cut(s) 12, 114, 308, 439
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 3 cut(s) 54, 201, 269
Hin1II CATG 4 cut(s) 10, 472, 551, 584
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 2 cut(s) 247, 395
HinfI GANTC 6 cut(s) 164, 218, 263, 313, 442, 544
HpaII CCGG 4 cut(s) 12, 114, 308, 439
HphI GGTGA 3 cut(s) 82, 103, 115
Hpy188I TCNGA 2 cut(s) 223, 654
Hpy188III TCNNGA 2 cut(s) 151, 358
Hpy99I CGWCG 5 cut(s) 143, 146, 271, 304, 334
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 30, 493, 515, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 3 cut(s) 23, 317, 573
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 3 cut(s) 54, 201, 269
Hsp92II CATG 4 cut(s) 10, 472, 551, 584
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 223, 276, 289
LguI GCTCTTC 1 cut(s) 47
Lsp1109I GCAGC 4 cut(s) 14, 329, 538, 589
LweI GCATC 3 cut(s) 27, 90, 524
MaeI CTAG 1 cut(s) 608
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 4 cut(s) 109, 121, 202, 592
MalI GATC 3 cut(s) 225, 278, 291
MboI GATC 3 cut(s) 223, 276, 289
MboII GAAGA 4 cut(s) 34, 52, 377, 596
MflI RGATCY 1 cut(s) 289
MluCI AATT 1 cut(s) 409
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 158, 307, 538
Mph1103I ATGCAT 2 cut(s) 495, 517
MroNI GCCGGC 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 4 cut(s) 12, 114, 308, 439
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 521
NaeI GCCGGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 2 cut(s) 489, 495
NdeII GATC 3 cut(s) 223, 276, 289
NgoMIV GCCGGC 1 cut(s) 307
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 4 cut(s) 10, 472, 551, 584
NlaIV GGNNCC 2 cut(s) 55, 601
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 3 cut(s) 109, 121, 202
NsiI ATGCAT 2 cut(s) 495, 517
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 6 cut(s) 126, 135, 198, 263, 272, 308
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 218, 263, 442
PkrI GCNGC 6 cut(s) 29, 53, 273, 344, 553, 579
PleI GAGTC 3 cut(s) 158, 307, 538
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 158, 307, 538
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 55, 601
PspPI GGNCC 1 cut(s) 600
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 47
SatI GCNGC 6 cut(s) 28, 52, 272, 343, 552, 578
Sau3AI GATC 3 cut(s) 223, 276, 289
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 3 cut(s) 158, 307, 538
ScrFI CCNGG 1 cut(s) 324
SetI ASST 7 cut(s) 29, 90, 183, 192, 204, 251, 399
SfaNI GCATC 3 cut(s) 27, 90, 524
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 1 cut(s) 600
Sse9I AATT 1 cut(s) 409
SsiI CCGC 4 cut(s) 51, 157, 272, 428
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 1 cut(s) 322
TaiI ACGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 236, 266, 359, 445
TasI AATT 1 cut(s) 409
TauI GCSGC 2 cut(s) 54, 274
TfiI GAWTC 3 cut(s) 218, 263, 442
TseFI GTSAC 3 cut(s) 109, 121, 202
TseI GCWGC 4 cut(s) 27, 342, 551, 577
Tsp45I GTSAC 3 cut(s) 109, 121, 202
TspDTI ATGAA 3 cut(s) 52, 491, 597
TspGWI ACGGA 3 cut(s) 127, 302, 592
VpaK11BI GGWCC 1 cut(s) 600
XspI CTAG 1 cut(s) 608
ZraI GACGTC 1 cut(s) 202
Zsp2I ATGCAT 2 cut(s) 495, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.