Rh5AG193000

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019944
Physical Location & Seq
Reverse (-)
22382313 .. 22395520
13208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG193000.1

Sequence Viewer

Length: 1287 bp
ATGTCTATCAGTACGAACTTTGGTGTCTCTGATTCAAATCCCATTGTTTCTGGATCTGGGGGTTCACAGTTTAGAGTCTCGGAAATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGAAAAGCAATGAAATAAAATGCTCATTGAGCATGAACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGGGACTTGATGATCCTGATGATGAACTTGAGGACAACATTCTGGAATGGAAACAGCCAGGCACTAGAACTCAGGAACTGCCTTTGCTCATGCAGTTCCGACTTTTTTACAAAGGCTATGCTATCAAAGGAACTTTTCTTGTCAATAAACTACAGAGTATGGTCTGTTTGCACAGGAATACTAGAAGGAAGGGAAAATTAAATTTGAACAGACAACTTGATGGAAATGGGAGATGCTATCCGCCACATTTGATCTCTGCCGGGCCTTATGATTCTCTCAAAGAAGTTGCTGTCAGAATTCTGCAAAACAAGGTGGCCACAGTTCCAATTCTTCATACTTCCTCAGAGGATGGTTCATTTCCACAGCTATTGCATCTTGCCTCCCTTTCGGGAATATTAAAATTTCAATTGGGAGTGTTGGCGGCTTGCGTTGTGGTTTTAGTTCTAATGGGCATGACCGGTTATCATCTCAGCTGCAACAAGATGCCCTTCTTCAGCGGCGCCCTCTTCATCACTCTTGCCATCGGCGTCCACCTCACCCCATACTTCCCTTCCGTCACCGGCTTCATCACCACCGTCTCCTCCGTCGTCGTTTTCCAGAACCGCCACGACTCCTGCCTCTCCCACCTCCACGACCTCGTCTGGGAAGTCACTCACTCCCCCGATTCTGATCCCCCCCCCTCGATTACCATAAGCTTGGCCTCTGCCGGTTCGACCCCGCCAATCTCCTCAACGGATCTTTGGTCATCGTTGCCGGCGACTCTTAGGCCAGGCTCGTCACTGACTCGCTGCTCGCTCTGGTTCTTGATTCAGAGTGGATGGACACGGTTGGGGATGAGCTGTTCAAGCGCCACAGTGATTATCATATTGTGGTTGATGAGATTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

428

Amino Acids

47.51

Weight (kDa)

8.93

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 896
AciI CCGC 5 cut(s) 638, 818, 894, 1000, 1115
AclWI GGATC 4 cut(s) 61, 404, 1061, 1140
AcoI YGGCCR 2 cut(s) 298, 711
AcsI RAATTY 4 cut(s) 121, 598, 693, 797
AcuI CTGAAG 1 cut(s) 874
AcyI GRCGYC 2 cut(s) 897, 924
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 221, 1039
AgeI ACCGGT 1 cut(s) 854
AgsI TTSAA 8 cut(s) 36, 106, 119, 241, 293, 604, 803, 1242
AjnI CCWGG 2 cut(s) 454, 1165
AloI GAACNNNNNNTCC 2 cut(s) 1222, 1254
AluBI AGCT 5 cut(s) 350, 763, 870, 1092, 1236
AluI AGCT 5 cut(s) 350, 763, 870, 1092, 1236
Alw26I GTCTC 3 cut(s) 31, 82, 979
AlwI GGATC 4 cut(s) 61, 404, 1061, 1140
AlwNI CAGNNNCTG 1 cut(s) 475
AoxI GGCC 5 cut(s) 298, 659, 711, 1095, 1163
ApeKI GCWGC 3 cut(s) 207, 870, 1185
ApoI RAATTY 4 cut(s) 121, 598, 693, 797
AsiGI ACCGGT 1 cut(s) 854
AspLEI GCGC 2 cut(s) 899, 1247
AspS9I GGNCC 2 cut(s) 224, 659
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 925, 946, 958
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 216
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 896
BbvI GCAGC 3 cut(s) 194, 857, 1172
BccI CCATC 4 cut(s) 611, 740, 926, 1209
BciT130I CCWGG 2 cut(s) 456, 1167
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 3 cut(s) 31, 82, 979
BfaI CTAG 3 cut(s) 333, 462, 579
BfmI CTRYAG 2 cut(s) 193, 548
BfoI RGCGCY 2 cut(s) 900, 1248
BisI GCNGC 5 cut(s) 208, 819, 871, 895, 1186
BlsI GCNGC 5 cut(s) 209, 820, 872, 896, 1187
Bme1390I CCNGG 3 cut(s) 456, 658, 1167
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 224, 659
BmiI GGNNCC 1 cut(s) 898
BmrFI CCNGG 3 cut(s) 456, 658, 1167
BmsI GCATC 4 cut(s) 85, 620, 778, 870
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 658
BsaBI GATNNNNATC 2 cut(s) 36, 1065
BsaHI GRCGYC 2 cut(s) 897, 924
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 1039
Bse118I RCCGGY 4 cut(s) 854, 956, 1103, 1150
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 253
Bse8I GATNNNNATC 2 cut(s) 36, 1065
BseBI CCWGG 2 cut(s) 456, 1167
BseGI GGATG 3 cut(s) 751, 1220, 1236
BseJI GATNNNNATC 2 cut(s) 36, 1065
BseLI CCNNNNNNNGG 2 cut(s) 221, 1039
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 3 cut(s) 482, 753, 880
BseRI GAGGAG 2 cut(s) 967, 1114
BseXI GCAGC 3 cut(s) 194, 857, 1172
BshFI GGCC 5 cut(s) 300, 661, 713, 1097, 1165
BshNI GGYRCC 1 cut(s) 896
BshTI ACCGGT 1 cut(s) 854
BsiSI CCGG 6 cut(s) 301, 657, 855, 957, 1104, 1151
BslFI GGGAC 2 cut(s) 170, 414
BslI CCNNNNNNNGG 2 cut(s) 221, 1039
BsmAI GTCTC 3 cut(s) 31, 82, 979
BsmBI CGTCTC 1 cut(s) 979
BsmFI GGGAC 2 cut(s) 170, 414
BsnI GGCC 5 cut(s) 300, 661, 713, 1097, 1165
Bsp143I GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
BspACI CCGC 5 cut(s) 638, 818, 894, 1000, 1115
BspANI GGCC 5 cut(s) 300, 661, 713, 1097, 1165
BspCNI CTCAG 3 cut(s) 481, 752, 879
BspLI GGNNCC 1 cut(s) 898
BspPI GGATC 4 cut(s) 61, 404, 1061, 1140
BspT107I GGYRCC 1 cut(s) 896
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 4 cut(s) 854, 956, 1103, 1150
BssAI RCCGGY 4 cut(s) 854, 956, 1103, 1150
BssMI GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
BssNI GRCGYC 2 cut(s) 897, 924
Bst2UI CCWGG 2 cut(s) 456, 1167
Bst4CI ACNGT 8 cut(s) 69, 197, 324, 389, 718, 973, 1224, 1252
Bst6I CTCTTC 1 cut(s) 908
BstACI GRCGYC 2 cut(s) 897, 924
BstC8I GCNNGC 4 cut(s) 212, 823, 1152, 1190
BstDEI CTNAG 6 cut(s) 201, 216, 468, 739, 866, 1160
BstF5I GGATG 3 cut(s) 751, 1220, 1236
BstH2I RGCGCY 2 cut(s) 900, 1248
BstHHI GCGC 2 cut(s) 899, 1247
BstKTI GATC 7 cut(s) 56, 138, 184, 412, 651, 1069, 1135
BstMAI GTCTC 3 cut(s) 31, 82, 979
BstMBI GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 267, 1242
BstNI CCWGG 2 cut(s) 456, 1167
BstSCI CCNGG 3 cut(s) 454, 656, 1165
BstSFI CTRYAG 2 cut(s) 193, 548
BstV1I GCAGC 3 cut(s) 194, 857, 1172
BstX2I RGATCY 2 cut(s) 53, 1132
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 2 cut(s) 53, 1132
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 5 cut(s) 300, 661, 713, 1097, 1165
BtsCI GGATG 3 cut(s) 751, 1220, 1236
BtsIMutI CAGTG 4 cut(s) 202, 320, 1175, 1257
Cac8I GCNNGC 4 cut(s) 212, 823, 1152, 1190
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 2 cut(s) 899, 1247
Cfr10I RCCGGY 4 cut(s) 854, 956, 1103, 1150
Cfr13I GGNCC 2 cut(s) 224, 659
CseI GACGC 1 cut(s) 913
Csp6I GTAC 1 cut(s) 12
CspAI ACCGGT 1 cut(s) 854
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 3 cut(s) 271, 487, 850
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 6 cut(s) 201, 216, 468, 739, 866, 1160
DinI GGCGCC 1 cut(s) 898
DpnI GATC 7 cut(s) 55, 137, 183, 411, 650, 1068, 1134
DpnII GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
EaeI YGGCCR 2 cut(s) 298, 711
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
EciI GGCGGA 1 cut(s) 627
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 874
Eco81I CCTNAGG 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 454, 1165
EgeI GGCGCC 1 cut(s) 898
EheI GGCGCC 1 cut(s) 898
Esp3I CGTCTC 1 cut(s) 979
FaeI CATG 3 cut(s) 274, 490, 853
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FaqI GGGAC 2 cut(s) 170, 414
FatI CATG 3 cut(s) 270, 486, 849
FauI CCCGC 1 cut(s) 1122
Fnu4HI GCNGC 5 cut(s) 208, 819, 871, 895, 1186
FokI GGATG 3 cut(s) 758, 1227, 1243
Fsp4HI GCNGC 5 cut(s) 208, 819, 871, 895, 1186
FspBI CTAG 3 cut(s) 333, 462, 579
GlaI GCGC 2 cut(s) 898, 1246
GluI GCNGC 5 cut(s) 208, 819, 871, 895, 1186
HaeII RGCGCY 2 cut(s) 900, 1248
HaeIII GGCC 5 cut(s) 300, 661, 713, 1097, 1165
HapII CCGG 6 cut(s) 301, 657, 855, 957, 1104, 1151
HgaI GACGC 1 cut(s) 913
HhaI GCGC 2 cut(s) 899, 1247
Hin1I GRCGYC 2 cut(s) 897, 924
Hin1II CATG 3 cut(s) 274, 490, 853
Hin6I GCGC 2 cut(s) 897, 1245
HinP1I GCGC 2 cut(s) 897, 1245
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 1090
HinfI GANTC 8 cut(s) 32, 75, 668, 1007, 1061, 1156, 1180, 1204
HpaII CCGG 6 cut(s) 301, 657, 855, 957, 1104, 1151
HphI GGTGA 3 cut(s) 925, 946, 958
Hpy166II GTNNAC 3 cut(s) 65, 327, 928
Hpy188I TCNGA 9 cut(s) 31, 82, 114, 144, 497, 692, 742, 1066, 1209
Hpy188III TCNNGA 7 cut(s) 51, 413, 440, 470, 786, 994, 1201
Hpy8I GTNNAC 3 cut(s) 65, 327, 928
Hpy99I CGWCG 2 cut(s) 986, 989
HpyAV CCTTC 5 cut(s) 359, 576, 580, 895, 957
HpyCH4III ACNGT 8 cut(s) 69, 197, 324, 389, 718, 973, 1224, 1252
HpyCH4V TGCA 7 cut(s) 98, 210, 490, 568, 700, 769, 873
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 1242
HpyF3I CTNAG 6 cut(s) 201, 216, 468, 739, 866, 1160
Hsp92I GRCGYC 2 cut(s) 897, 924
Hsp92II CATG 3 cut(s) 274, 490, 853
HspAI GCGC 2 cut(s) 897, 1245
KasI GGCGCC 1 cut(s) 896
KroI GCCGGC 1 cut(s) 1150
KroNI GCCGGC 1 cut(s) 1152
Kzo9I GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
Lsp1109I GCAGC 3 cut(s) 194, 857, 1172
LweI GCATC 4 cut(s) 85, 620, 778, 870
MaeI CTAG 3 cut(s) 333, 462, 579
MaeIII GTNAC 4 cut(s) 88, 952, 1045, 1173
MalI GATC 7 cut(s) 55, 137, 183, 411, 650, 1068, 1134
MboI GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
MboII GAAGA 5 cut(s) 145, 176, 719, 880, 895
MfeI CAATTG 1 cut(s) 803
MflI RGATCY 2 cut(s) 53, 1132
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 7 cut(s) 121, 593, 598, 693, 723, 797, 803
MluNI TGGCCA 1 cut(s) 713
Mly113I GGCGCC 1 cut(s) 897
MlyI GAGTC 4 cut(s) 84, 1001, 1150, 1174
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 713
MroNI GCCGGC 1 cut(s) 1150
MscI TGGCCA 1 cut(s) 713
MseI TTAA 2 cut(s) 596, 794
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 870, 894
MspI CCGG 6 cut(s) 301, 657, 855, 957, 1104, 1151
MspR9I CCNGG 3 cut(s) 456, 658, 1167
MunI CAATTG 1 cut(s) 803
MvaI CCWGG 2 cut(s) 456, 1167
MwoI GCNNNNNNNGC 2 cut(s) 267, 1242
NaeI GCCGGC 1 cut(s) 1152
NarI GGCGCC 1 cut(s) 897
NciI CCSGG 1 cut(s) 658
NdeII GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
NgoMIV GCCGGC 1 cut(s) 1150
NlaIII CATG 3 cut(s) 274, 490, 853
NlaIV GGNNCC 1 cut(s) 898
NmuCI GTSAC 3 cut(s) 952, 1045, 1173
PcsI WCGNNNNNNNCGW 1 cut(s) 1151
PdiI GCCGGC 1 cut(s) 1152
PfeI GAWTC 4 cut(s) 32, 668, 1061, 1204
PflFI GACNNNGTC 2 cut(s) 161, 1034
PinAI ACCGGT 1 cut(s) 854
PkrI GCNGC 5 cut(s) 209, 820, 872, 896, 1187
PleI GAGTC 4 cut(s) 83, 1001, 1150, 1174
PluTI GGCGCC 1 cut(s) 900
PpsI GAGTC 4 cut(s) 83, 1001, 1150, 1174
Psp6I CCWGG 2 cut(s) 454, 1165
PspGI CCWGG 2 cut(s) 454, 1165
PspN4I GGNNCC 1 cut(s) 898
PspPI GGNCC 2 cut(s) 224, 659
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 53, 1132
PsyI GACNNNGTC 2 cut(s) 161, 1034
PvuII CAGCTG 1 cut(s) 870
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 596, 794
SatI GCNGC 5 cut(s) 208, 819, 871, 895, 1186
Sau3AI GATC 7 cut(s) 53, 135, 181, 409, 648, 1066, 1132
Sau96I GGNCC 2 cut(s) 224, 659
SchI GAGTC 4 cut(s) 84, 1001, 1150, 1174
ScrFI CCNGG 3 cut(s) 456, 658, 1167
SfaNI GCATC 4 cut(s) 85, 620, 778, 870
SfcI CTRYAG 2 cut(s) 193, 548
SfoI GGCGCC 1 cut(s) 898
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 7 cut(s) 121, 593, 598, 693, 723, 797, 803
SsiI CCGC 5 cut(s) 638, 818, 894, 1000, 1115
SspDI GGCGCC 1 cut(s) 896
SspI AATATT 1 cut(s) 792
SspMI CTAG 3 cut(s) 333, 462, 579
StyD4I CCNGG 3 cut(s) 454, 656, 1165
TaaI ACNGT 8 cut(s) 69, 197, 324, 389, 718, 973, 1224, 1252
TaqI TCGA 2 cut(s) 1079, 1109
TaqII GACCGA 1 cut(s) 128
TasI AATT 7 cut(s) 121, 593, 598, 693, 723, 797, 803
TauI GCSGC 2 cut(s) 821, 897
TfiI GAWTC 4 cut(s) 32, 668, 1061, 1204
Tru1I TTAA 2 cut(s) 596, 794
Tru9I TTAA 2 cut(s) 596, 794
TscAI CASTG 4 cut(s) 202, 327, 1182, 1257
TseFI GTSAC 3 cut(s) 952, 1045, 1173
TseI GCWGC 3 cut(s) 207, 870, 1185
Tsp45I GTSAC 3 cut(s) 952, 1045, 1173
TspDTI ATGAA 7 cut(s) 264, 287, 435, 719, 741, 895, 952
TspGWI ACGGA 3 cut(s) 940, 970, 1145
TspRI CASTG 4 cut(s) 202, 327, 1182, 1257
Tth111I GACNNNGTC 2 cut(s) 161, 1034
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 4 cut(s) 121, 598, 693, 797
XspI CTAG 3 cut(s) 333, 462, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.