Rmu_sc0003500.1_g000042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003500.1
OG0019944
Physical Location & Seq
Reverse (-)
163832 .. 164278
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003500.1_g000042.1.cds

Sequence Viewer

Length: 447 bp
atgggcatgaccggttatcatctcagctgcaacaagatgcccttcttcagcggcgccctcttcatcactctcgccatcggcgtccacctcaccccatacttcccttccgtcaccggcttcatcaccaccgtctcctccgtcatcgttttccagaaccgccacgactcctgcctctcccacctccacgacctcgtatgggaagtcactcactcccccgattctgatccccccccctcctcgattaccataagcttggcctcggccggttcgaccccgccaatctcctcaacggatctttggtcatcgttgccggcgactcttaggccaggctcgtcactgactcgctgctcgctctggttcttgattcagagtggatggacacggttggggatgagctgttcaagcgccacattgattatcatattgtggttgatgagattgggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.04

Weight (kDa)

6.99

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 51, 157, 275
AclWI GGATC 2 cut(s) 218, 300
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 2 cut(s) 54, 81
AfiI CCNNNNNNNGG 1 cut(s) 196
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 402
AjnI CCWGG 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 3 cut(s) 27, 252, 396
AluI AGCT 3 cut(s) 27, 252, 396
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 2 cut(s) 218, 300
AoxI GGCC 3 cut(s) 255, 261, 323
ApeKI GCWGC 2 cut(s) 27, 345
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 2 cut(s) 56, 407
AsuHPI GGTGA 3 cut(s) 82, 103, 115
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 14, 332
BccI CCATC 2 cut(s) 83, 369
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 136
BfoI RGCGCY 2 cut(s) 57, 408
BisI GCNGC 3 cut(s) 28, 52, 346
BlsI GCNGC 3 cut(s) 29, 53, 347
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 54, 81
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 4 cut(s) 11, 113, 263, 310
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 380, 396
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 3 cut(s) 124, 226, 274
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 14, 332
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 257, 263, 325
BshNI GGYRCC 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 4 cut(s) 12, 114, 264, 311
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 3 cut(s) 257, 263, 325
Bsp143I GATC 2 cut(s) 223, 292
BspACI CCGC 3 cut(s) 51, 157, 275
BspANI GGCC 3 cut(s) 257, 263, 325
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 218, 300
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 4 cut(s) 11, 113, 263, 310
BssAI RCCGGY 4 cut(s) 11, 113, 263, 310
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 223, 292
BssNI GRCGYC 2 cut(s) 54, 81
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 130, 384
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 2 cut(s) 54, 81
BstC8I GCNNGC 2 cut(s) 312, 350
BstDEI CTNAG 2 cut(s) 23, 320
BstF5I GGATG 2 cut(s) 380, 396
BstH2I RGCGCY 2 cut(s) 57, 408
BstHHI GCGC 2 cut(s) 56, 407
BstKTI GATC 2 cut(s) 226, 295
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 223, 292
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 14, 332
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 3 cut(s) 257, 263, 325
BtsCI GGATG 2 cut(s) 380, 396
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 312, 350
CfoI GCGC 2 cut(s) 56, 407
Cfr10I RCCGGY 4 cut(s) 11, 113, 263, 310
CseI GACGC 1 cut(s) 70
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 27, 117, 252, 257, 263, 325, 330, 396
CviKI_1 RGCY 8 cut(s) 27, 117, 252, 257, 263, 325, 330, 396
DdeI CTNAG 2 cut(s) 23, 320
DinI GGCGCC 1 cut(s) 55
DpnI GATC 2 cut(s) 225, 294
DpnII GATC 2 cut(s) 223, 292
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 261
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 325
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 10
FaiI YATR 5 cut(s) 8, 97, 196, 248, 422
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 28, 52, 346
FokI GGATG 2 cut(s) 387, 403
Fsp4HI GCNGC 3 cut(s) 28, 52, 346
GlaI GCGC 2 cut(s) 55, 406
GluI GCNGC 3 cut(s) 28, 52, 346
HaeII RGCGCY 2 cut(s) 57, 408
HaeIII GGCC 3 cut(s) 257, 263, 325
HapII CCGG 4 cut(s) 12, 114, 264, 311
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 56, 407
Hin1I GRCGYC 2 cut(s) 54, 81
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 2 cut(s) 54, 405
HinP1I GCGC 2 cut(s) 54, 405
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 164, 218, 316, 340, 364
HpaII CCGG 4 cut(s) 12, 114, 264, 311
HphI GGTGA 3 cut(s) 82, 103, 115
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 223, 369
Hpy188III TCNNGA 2 cut(s) 151, 361
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 52, 114
HpyCH4III ACNGT 2 cut(s) 130, 384
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 2 cut(s) 23, 320
Hsp92I GRCGYC 2 cut(s) 54, 81
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 2 cut(s) 54, 405
KasI GGCGCC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 223, 292
LpnPI CCDG 9 cut(s) 25, 127, 164, 181, 277, 312, 324, 339, 340
Lsp1109I GCAGC 2 cut(s) 14, 332
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 109, 202, 333
MalI GATC 2 cut(s) 225, 294
MboI GATC 2 cut(s) 223, 292
MboII GAAGA 2 cut(s) 37, 52
MflI RGATCY 1 cut(s) 292
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 158, 310, 334
MroNI GCCGGC 1 cut(s) 310
MspA1I CMGCKG 2 cut(s) 27, 51
MspI CCGG 4 cut(s) 12, 114, 264, 311
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 402
NaeI GCCGGC 1 cut(s) 312
NarI GGCGCC 1 cut(s) 54
NdeII GATC 2 cut(s) 223, 292
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 3 cut(s) 109, 202, 333
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 266, 311
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 218, 364
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 29, 53, 347
PleI GAGTC 3 cut(s) 158, 310, 334
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 158, 310, 334
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 27
SatI GCNGC 3 cut(s) 28, 52, 346
Sau3AI GATC 2 cut(s) 223, 292
SchI GAGTC 3 cut(s) 158, 310, 334
ScrFI CCNGG 1 cut(s) 327
SetI ASST 6 cut(s) 29, 90, 183, 192, 254, 398
SfaNI GCATC 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 55
SsiI CCGC 3 cut(s) 51, 157, 275
SspDI GGCGCC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 130, 384
TaqI TCGA 2 cut(s) 239, 269
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 218, 364
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 3 cut(s) 109, 202, 333
TseI GCWGC 2 cut(s) 27, 345
Tsp45I GTSAC 3 cut(s) 109, 202, 333
TspDTI ATGAA 2 cut(s) 52, 109
TspGWI ACGGA 3 cut(s) 97, 127, 305
TspRI CASTG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.