Rw5G017580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019944
Physical Location & Seq
Reverse (-)
22457450 .. 22458234
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017580.1

Sequence Viewer

Length: 711 bp
ATGGGCATGACCGGTTATCATCTCAGCTGCAACAAGATGCCCTTCTTCAGCGGCGCCCTCTTCATCACTCTCGCCATCGGCGTCCACCTCACCCCATACTTCCCTTCCGTCACCGGCTTCATCACCACCGTCTCCTCCGTCGTCGTTTTCCAGAACCGCCACGACTCCTGCCTCTCCCACCTCCACGACCTCGTCTGGGAAGTCACTCACTCCCCCGATTCTGATCCCCCCCCCCCCTCGATTACCATAAGCTTGGCCTCGGCCGGTTCGACCCCGCCAATCTCCTCAACGGATCTTTGGCTCGTCACTGACTCGCTGCTCGCTCTGGTTCTTGATTCAGAGTGGATGGACATGGTTGGGGATGAGCTGTTCAAGCACCACAGTGATTATCATATTGTGGTTGATGAGATTGGGATGAGGTTAGACTTCTTTTGGCTTTATGCTCTCAATTTGACTTCTCTGGTTGCGGGTTTCAACCGAAATCGAAACTACCCAAATGTCTTGGTCATGGGTTCTGGTTTGTGGCATATGCATATGCTTCATTTCACTAATGCATCTTGTGCTTCTTTGCAATCACTGAGGACTCATGCTGCTTCTTTGGTCTCCTCATCTAAGCAGCATGAAGAAGCAGTAACAGGGTCCGTGCTGGCCACAGAGAGAGAGAACCCAAAAAGGAAAAAAGAAAACTCTGACTTTTTTAGGGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.25

Weight (kDa)

5.91

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 4 cut(s) 51, 157, 275, 467
AclWI GGATC 2 cut(s) 218, 300
AcoI YGGCCR 2 cut(s) 261, 648
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 2 cut(s) 54, 81
AfiI CCNNNNNNNGG 1 cut(s) 196
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 373, 475
AleI CACNNNNGTG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 27, 252, 367
AluI AGCT 3 cut(s) 27, 252, 367
Alw26I GTCTC 2 cut(s) 136, 607
AlwI GGATC 2 cut(s) 218, 300
AoxI GGCC 3 cut(s) 255, 261, 648
ApeKI GCWGC 4 cut(s) 27, 316, 590, 616
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 639
AsuHPI GGTGA 3 cut(s) 82, 103, 115
AvaII GGWCC 1 cut(s) 639
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 14, 303, 577, 628
BccI CCATC 2 cut(s) 83, 340
BcoDI GTCTC 2 cut(s) 136, 607
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 5 cut(s) 28, 52, 317, 591, 617
BlsI GCNGC 5 cut(s) 29, 53, 318, 592, 618
Bme18I GGWCC 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 639
BmiI GGNNCC 2 cut(s) 55, 640
BmsI GCATC 2 cut(s) 27, 563
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 54, 81
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 3 cut(s) 11, 113, 263
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 3 cut(s) 351, 367, 420
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 37, 569
BseRI GAGGAG 3 cut(s) 124, 274, 595
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 4 cut(s) 14, 303, 577, 628
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 257, 263, 650
BshNI GGYRCC 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 3 cut(s) 12, 114, 264
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 136, 607
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 3 cut(s) 257, 263, 650
Bso31I GGTCTC 1 cut(s) 607
Bsp143I GATC 2 cut(s) 223, 292
BspACI CCGC 4 cut(s) 51, 157, 275, 467
BspANI GGCC 3 cut(s) 257, 263, 650
BspCNI CTCAG 2 cut(s) 36, 570
BspLI GGNNCC 2 cut(s) 55, 640
BspPI GGATC 2 cut(s) 218, 300
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 607
BsrFI RCCGGY 3 cut(s) 11, 113, 263
BssAI RCCGGY 3 cut(s) 11, 113, 263
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 223, 292
BssNI GRCGYC 2 cut(s) 54, 81
Bst4CI ACNGT 2 cut(s) 130, 383
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 2 cut(s) 54, 81
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 321, 648
BstDEI CTNAG 3 cut(s) 23, 578, 612
BstF5I GGATG 3 cut(s) 351, 367, 420
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 226, 295
BstMAI GTCTC 2 cut(s) 136, 607
BstMBI GATC 2 cut(s) 223, 292
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 373, 560
BstV1I GCAGC 4 cut(s) 14, 303, 577, 628
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 3 cut(s) 257, 263, 650
BtsCI GGATG 3 cut(s) 351, 367, 420
BtsIMutI CAGTG 3 cut(s) 306, 388, 575
Cac8I GCNNGC 2 cut(s) 321, 648
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 3 cut(s) 11, 113, 263
Cfr13I GGNCC 1 cut(s) 639
CseI GACGC 1 cut(s) 70
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 5 cut(s) 7, 352, 508, 587, 620
CviJI RGCY 9 cut(s) 27, 117, 252, 257, 263, 301, 367, 436, 650
CviKI_1 RGCY 9 cut(s) 27, 117, 252, 257, 263, 301, 367, 436, 650
DdeI CTNAG 3 cut(s) 23, 578, 612
DinI GGCGCC 1 cut(s) 55
DpnI GATC 2 cut(s) 225, 294
DpnII GATC 2 cut(s) 223, 292
EaeI YGGCCR 2 cut(s) 261, 648
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 639
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 31
EcoT22I ATGCAT 2 cut(s) 534, 556
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 5 cut(s) 10, 355, 511, 590, 623
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 5 cut(s) 6, 351, 507, 586, 619
FauI CCCGC 2 cut(s) 282, 460
FauNDI CATATG 2 cut(s) 528, 534
Fnu4HI GCNGC 5 cut(s) 28, 52, 317, 591, 617
FokI GGATG 3 cut(s) 358, 374, 427
Fsp4HI GCNGC 5 cut(s) 28, 52, 317, 591, 617
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 28, 52, 317, 591, 617
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 3 cut(s) 257, 263, 650
HapII CCGG 3 cut(s) 12, 114, 264
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 2 cut(s) 54, 81
Hin1II CATG 5 cut(s) 10, 355, 511, 590, 623
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 164, 218, 311, 335, 583
HpaII CCGG 3 cut(s) 12, 114, 264
HphI GGTGA 3 cut(s) 82, 103, 115
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 223, 340, 691
Hpy188III TCNNGA 2 cut(s) 151, 332
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 2 cut(s) 143, 146
HpyAV CCTTC 2 cut(s) 52, 114
HpyCH4III ACNGT 2 cut(s) 130, 383
HpyCH4V TGCA 4 cut(s) 30, 532, 554, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 560
HpyF3I CTNAG 3 cut(s) 23, 578, 612
Hsp92I GRCGYC 2 cut(s) 54, 81
Hsp92II CATG 5 cut(s) 10, 355, 511, 590, 623
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 223, 292
Lsp1109I GCAGC 4 cut(s) 14, 303, 577, 628
LweI GCATC 2 cut(s) 27, 563
MaeIII GTNAC 4 cut(s) 109, 202, 304, 631
MalI GATC 2 cut(s) 225, 294
MboI GATC 2 cut(s) 223, 292
MboII GAAGA 3 cut(s) 37, 52, 635
MflI RGATCY 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 650
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 158, 305, 577
Mox20I TGGCCA 1 cut(s) 650
Mph1103I ATGCAT 2 cut(s) 534, 556
MscI TGGCCA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 2 cut(s) 27, 51
MspI CCGG 3 cut(s) 12, 114, 264
MwoI GCNNNNNNNGC 2 cut(s) 373, 560
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 2 cut(s) 528, 534
NdeII GATC 2 cut(s) 223, 292
NlaIII CATG 5 cut(s) 10, 355, 511, 590, 623
NlaIV GGNNCC 2 cut(s) 55, 640
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 3 cut(s) 109, 202, 304
NsiI ATGCAT 2 cut(s) 534, 556
OliI CACNNNNGTG 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 266
PfeI GAWTC 2 cut(s) 218, 335
PflFI GACNNNGTC 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 5 cut(s) 29, 53, 318, 592, 618
PleI GAGTC 3 cut(s) 158, 305, 577
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 158, 305, 577
PspN4I GGNNCC 2 cut(s) 55, 640
PspPI GGNCC 1 cut(s) 639
PsuI RGATCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 381
SatI GCNGC 5 cut(s) 28, 52, 317, 591, 617
Sau3AI GATC 2 cut(s) 223, 292
Sau96I GGNCC 1 cut(s) 639
SchI GAGTC 3 cut(s) 158, 305, 577
SetI ASST 7 cut(s) 29, 90, 183, 192, 254, 369, 422
SfaNI GCATC 2 cut(s) 27, 563
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 1 cut(s) 448
SsiI CCGC 4 cut(s) 51, 157, 275, 467
SspDI GGCGCC 1 cut(s) 53
TaaI ACNGT 2 cut(s) 130, 383
TaqI TCGA 3 cut(s) 239, 269, 484
TasI AATT 1 cut(s) 448
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 218, 335
TscAI CASTG 3 cut(s) 313, 388, 582
TseFI GTSAC 3 cut(s) 109, 202, 304
TseI GCWGC 4 cut(s) 27, 316, 590, 616
Tsp45I GTSAC 3 cut(s) 109, 202, 304
TspDTI ATGAA 4 cut(s) 52, 109, 530, 636
TspGWI ACGGA 4 cut(s) 97, 127, 305, 631
TspRI CASTG 3 cut(s) 313, 388, 582
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 639
Zsp2I ATGCAT 2 cut(s) 534, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.