Rmu_sc0007802.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007802.1
OG0019944
Physical Location & Seq
Reverse (-)
43420 .. 43863
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007802.1_g000015.1.cds

Sequence Viewer

Length: 444 bp
atgggcatggccggttatcatctcagctgcaacaagatgctcttcttcagcggcgccctcttcatcactctcaccatcggcgtccacctcaccccttacttcccttccgtcaccggcttcgtcaccaccgtctcctccgtcttcgttttccagaaccgccatgactcctgcctctcccacctccacgacctcgtctgggacgtcactcactcccccgattctgatccccccccctcgattaccataagcttggcctcggccaattcgaccccgccgatctcctcaacggatcttgggtcatcgttgccggcgactcttaggccaggctcatcactgactcgctgctcgctctggttctcgattcagagtggatggacacggttggggatgagctgttcaagcgccacagtgattatcagattgtggttgatgagattgggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.91

Weight (kDa)

7.77

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 51, 157, 272
AclWI GGATC 2 cut(s) 218, 297
AcoI YGGCCR 2 cut(s) 9, 258
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 3 cut(s) 54, 81, 201
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 399
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 3 cut(s) 27, 249, 393
AluI AGCT 3 cut(s) 27, 249, 393
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 2 cut(s) 218, 297
AoxI GGCC 4 cut(s) 9, 252, 258, 320
ApeKI GCWGC 2 cut(s) 27, 342
AspLEI GCGC 2 cut(s) 56, 404
AsuHPI GGTGA 4 cut(s) 64, 82, 103, 115
BanI GGYRCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 14, 329
BccI CCATC 2 cut(s) 83, 366
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 136
BfoI RGCGCY 2 cut(s) 57, 405
BisI GCNGC 3 cut(s) 28, 52, 343
BlsI GCNGC 3 cut(s) 29, 53, 344
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 3 cut(s) 54, 81, 201
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 3 cut(s) 11, 113, 307
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 377, 393
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 124, 271
BseXI GCAGC 2 cut(s) 14, 329
BshFI GGCC 4 cut(s) 11, 254, 260, 322
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 12, 114, 308
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 4 cut(s) 11, 254, 260, 322
Bsp143I GATC 3 cut(s) 223, 276, 289
BspACI CCGC 3 cut(s) 51, 157, 272
BspANI GGCC 4 cut(s) 11, 254, 260, 322
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 218, 297
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 3 cut(s) 11, 113, 307
BssAI RCCGGY 3 cut(s) 11, 113, 307
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 223, 276, 289
BssNI GRCGYC 3 cut(s) 54, 81, 201
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 130, 381, 409
Bst6I CTCTTC 2 cut(s) 47, 65
BstACI GRCGYC 3 cut(s) 54, 81, 201
BstC8I GCNNGC 2 cut(s) 309, 347
BstDEI CTNAG 2 cut(s) 23, 317
BstF5I GGATG 2 cut(s) 377, 393
BstH2I RGCGCY 2 cut(s) 57, 405
BstHHI GCGC 2 cut(s) 56, 404
BstKTI GATC 3 cut(s) 226, 279, 292
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 223, 276, 289
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 14, 329
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 4 cut(s) 11, 254, 260, 322
BtsCI GGATG 2 cut(s) 377, 393
BtsIMutI CAGTG 2 cut(s) 332, 414
Cac8I GCNNGC 2 cut(s) 309, 347
CfoI GCGC 2 cut(s) 56, 404
Cfr10I RCCGGY 3 cut(s) 11, 113, 307
CseI GACGC 1 cut(s) 70
CviAII CATG 2 cut(s) 7, 161
CviJI RGCY 9 cut(s) 11, 27, 117, 249, 254, 260, 322, 327, 393
CviKI_1 RGCY 9 cut(s) 11, 27, 117, 249, 254, 260, 322, 327, 393
DdeI CTNAG 2 cut(s) 23, 317
DinI GGCGCC 1 cut(s) 55
DpnI GATC 3 cut(s) 225, 278, 291
DpnII GATC 3 cut(s) 223, 276, 289
EaeI YGGCCR 2 cut(s) 9, 258
Eam1104I CTCTTC 2 cut(s) 47, 65
EarI CTCTTC 2 cut(s) 47, 65
Eco57I CTGAAG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 322
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 2 cut(s) 10, 164
FaiI YATR 3 cut(s) 8, 162, 245
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 6, 160
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 28, 52, 343
FokI GGATG 2 cut(s) 384, 400
Fsp4HI GCNGC 3 cut(s) 28, 52, 343
GlaI GCGC 2 cut(s) 55, 403
GluI GCNGC 3 cut(s) 28, 52, 343
HaeII RGCGCY 2 cut(s) 57, 405
HaeIII GGCC 4 cut(s) 11, 254, 260, 322
HapII CCGG 3 cut(s) 12, 114, 308
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 56, 404
Hin1I GRCGYC 3 cut(s) 54, 81, 201
Hin1II CATG 2 cut(s) 10, 164
Hin6I GCGC 2 cut(s) 54, 402
HinP1I GCGC 2 cut(s) 54, 402
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 5 cut(s) 164, 218, 313, 337, 361
HpaII CCGG 3 cut(s) 12, 114, 308
HphI GGTGA 4 cut(s) 64, 82, 103, 115
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 223, 366, 419
Hpy188III TCNNGA 2 cut(s) 151, 358
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 3 cut(s) 130, 381, 409
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 2 cut(s) 23, 317
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 3 cut(s) 54, 81, 201
Hsp92II CATG 2 cut(s) 10, 164
HspAI GCGC 2 cut(s) 54, 402
KasI GGCGCC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 223, 276, 289
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 9 cut(s) 25, 127, 164, 181, 181, 309, 321, 336, 337
Lsp1109I GCAGC 2 cut(s) 14, 329
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 109, 121, 202
MalI GATC 3 cut(s) 225, 278, 291
MboI GATC 3 cut(s) 223, 276, 289
MboII GAAGA 4 cut(s) 34, 37, 52, 133
MflI RGATCY 1 cut(s) 289
MluCI AATT 1 cut(s) 262
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 158, 307, 331
MnlI CCTC 9 cut(s) 68, 98, 145, 182, 191, 200, 244, 265, 292
MroNI GCCGGC 1 cut(s) 307
MspA1I CMGCKG 2 cut(s) 27, 51
MspI CCGG 3 cut(s) 12, 114, 308
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 399
NaeI GCCGGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 54
NdeII GATC 3 cut(s) 223, 276, 289
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 10, 164
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 3 cut(s) 109, 121, 202
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 5 cut(s) 126, 198, 263, 272, 308
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 218, 361
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 29, 53, 344
PleI GAGTC 3 cut(s) 158, 307, 331
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 158, 307, 331
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 47
SatI GCNGC 3 cut(s) 28, 52, 343
Sau3AI GATC 3 cut(s) 223, 276, 289
SchI GAGTC 3 cut(s) 158, 307, 331
ScrFI CCNGG 1 cut(s) 324
SetI ASST 7 cut(s) 29, 90, 183, 192, 204, 251, 395
SfaNI GCATC 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 55
Sse9I AATT 1 cut(s) 262
SsiI CCGC 3 cut(s) 51, 157, 272
SspDI GGCGCC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 3 cut(s) 130, 381, 409
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 236, 266, 359
TasI AATT 1 cut(s) 262
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 218, 361
TscAI CASTG 2 cut(s) 339, 414
TseFI GTSAC 3 cut(s) 109, 121, 202
TseI GCWGC 2 cut(s) 27, 342
Tsp45I GTSAC 3 cut(s) 109, 121, 202
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 3 cut(s) 97, 127, 302
TspRI CASTG 2 cut(s) 339, 414
Tth111I GACNNNGTC 1 cut(s) 191
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.