Rh5CG211100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019944
Physical Location & Seq
Reverse (-)
21422896 .. 21424737
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG211100.1

Sequence Viewer

Length: 252 bp
ATGGGCATGGCCGGTTATCATCTCAGCCACAACAAGATGCTCTTCTTCAGCGGTGCCCTCTTCATCATTCTCGCCATCGGCGTCCGCCTCACCCCTTACTTCCCTTCCGTCACCGGCTTCGTCATCATCGTCTCCTCCGTCGTCGTTTTCCAGAACCGCCACGACTCCTGCCTCTCCCACCTCTACGACCTCGTCTGGGACGTCACTCACTTCCCCGATTCTGATCCCCCCCCCCCCCCTCGATTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.28

Weight (kDa)

6.47

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0027411
rosa_multiflora Rmu_sc0003500.1_g000042 Rmu_sc0007802.1_g000015
rosa_samantha Rh5AG193000 Rh5BG190700 Rh5CG211100
rosa_wichuraiana Rw5G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 51, 85, 157
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 2 cut(s) 81, 201
AfiI CCNNNNNNNGG 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 82, 103
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 53
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 81, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 2 cut(s) 11, 113
Bse8I GATNNNNATC 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 58
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 12, 114
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 3 cut(s) 51, 85, 157
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 2 cut(s) 11, 113
BssAI RCCGGY 2 cut(s) 11, 113
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 2 cut(s) 81, 201
Bst6I CTCTTC 2 cut(s) 47, 65
BstACI GRCGYC 2 cut(s) 81, 201
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 11, 113
CseI GACGC 1 cut(s) 70
CviAII CATG 1 cut(s) 7
CviJI RGCY 3 cut(s) 11, 27, 117
CviKI_1 RGCY 3 cut(s) 11, 27, 117
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 47, 65
EarI CTCTTC 2 cut(s) 47, 65
EciI GGCGGA 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 250
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 212
FatI CATG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 11
HapII CCGG 2 cut(s) 12, 114
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 81, 201
Hin1II CATG 1 cut(s) 10
HinfI GANTC 2 cut(s) 164, 218
HpaII CCGG 2 cut(s) 12, 114
HphI GGTGA 2 cut(s) 82, 103
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 143, 146
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 81, 201
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 25, 127, 164, 181, 181
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 109, 202
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 34, 37, 52
MhlI GDGCHC 1 cut(s) 58
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 7 cut(s) 68, 98, 145, 182, 191, 200, 249
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 2 cut(s) 12, 114
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 109, 202
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 4 cut(s) 78, 126, 135, 198
PfeI GAWTC 1 cut(s) 218
PflFI GACNNNGTC 1 cut(s) 191
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 58
SetI ASST 3 cut(s) 183, 192, 204
SfaNI GCATC 1 cut(s) 27
SsiI CCGC 3 cut(s) 51, 85, 157
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 241
TfiI GAWTC 1 cut(s) 218
TseFI GTSAC 2 cut(s) 109, 202
Tsp45I GTSAC 2 cut(s) 109, 202
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 2 cut(s) 97, 127
Tth111I GACNNNGTC 1 cut(s) 191
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.