RchiOBHm_Chr5g0048511

Phosphatidate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020389
Physical Location & Seq
Forward (+)
45615178 .. 45616434
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32627

Sequence Viewer

Length: 378 bp
ATGTACTTACTGTGCTTCCTTATAATTTTTGGTTCACTACAAGTTGATGCCAGAATTTATCTTTGGAAATGGAATACTCATATAGTGATAGCAGATGTGGATGGGACAATCACAAAATTGGGTCAATCTCTCCAAAGAGCTAATTATGCTTTTAATATGATGCAGGAAAATGGATATGAATTACTTTTTTTGAGTGCGCGTGCTATTTCTCAGTCCTCTCAGACACAACAATTTTTGTTTAACATTAAGCAGGATGGGAAGGCTTTACCTGATGGGCCCGTTGTTATTTCTCCAGATGAACTTTTTCCTTCTCTTTTTCGGGAAGGTAAGGATATAGACGTAGAAATAGCTAAGTTTGGTCAGCTGCTTACTTCTTAG

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

4.96

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LNS2 PF08235 11 - 112 3.8e-29 LNS2 (Lipin/Ned1/Smp2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020389)

Species Orthologous Gene IDs
malus_domestica MD08G1102500.v1.1
rosa_chinensis RchiOBHm_Chr5g0048511
rosa_multiflora Rmu_co8061612.1_g000001
rosa_roxburghii Rroxscaffold_1G00033290
rosa_wichuraiana Rw5G029820 Rw5G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccII CGCG 1 cut(s) 199
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 3 cut(s) 140, 350, 364
AluI AGCT 3 cut(s) 140, 350, 364
AoxI GGCC 1 cut(s) 275
ApaI GGGCCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 275, 276
BaeGI GKGCMC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 351
BccI CCATC 3 cut(s) 95, 248, 266
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 275, 276
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 2 cut(s) 37, 150
BpmI CTGGAG 1 cut(s) 276
BseGI GGATG 2 cut(s) 106, 259
BseMII CTCAG 2 cut(s) 224, 233
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 277
BslFI GGGAC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 277
Bsp120I GGGCCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 279
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 223, 232
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 210, 219, 351, 375
BstF5I GGATG 2 cut(s) 106, 259
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 106, 259
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 275, 276
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 5 cut(s) 140, 263, 277, 350, 364
CviKI_1 RGCY 5 cut(s) 140, 263, 277, 350, 364
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 210, 219, 351, 375
Eco24I GRGCYC 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 279
FaiI YATR 7 cut(s) 23, 81, 83, 147, 158, 177, 335
FaqI GGGAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 2 cut(s) 113, 266
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 365
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 277
HhaI GCGC 1 cut(s) 199
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 293, 320
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 253, 317, 318
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 210, 219, 351, 375
HpySE526I ACGT 1 cut(s) 339
HspAI GCGC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 64, 149, 236, 282, 306
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 2 cut(s) 37, 150
MaeII ACGT 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 6 cut(s) 24, 54, 116, 142, 179, 230
MnlI CCTC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 3 cut(s) 153, 240, 246
MspA1I CMGCKG 1 cut(s) 364
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 366
PsiI TTATAA 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 277
PspOMI GGGCCC 1 cut(s) 275
PspPI GGNCC 2 cut(s) 275, 276
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 153, 240, 246
SatI GCNGC 1 cut(s) 365
Sau96I GGNCC 2 cut(s) 275, 276
SduI GDGCHC 1 cut(s) 279
SetI ASST 6 cut(s) 142, 271, 328, 342, 352, 366
SfaNI GCATC 2 cut(s) 37, 150
Sse9I AATT 6 cut(s) 24, 54, 116, 142, 179, 230
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 1 cut(s) 342
TasI AATT 6 cut(s) 24, 54, 116, 142, 179, 230
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 3 cut(s) 153, 240, 246
Tru9I TTAA 3 cut(s) 153, 240, 246
TseI GCWGC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 192, 312
XapI RAATTY 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.