Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020389

Physical Location & Seq

Genomic Coordinates Forward (+)

46541978 .. 46556305

Gene Structure 14328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCTTCCACTCATCGACTACGGGCAAGCAAATTTTGAAACTAACAAATTAGGGTTTCGGAAAATCCAATCGAATCGAAAGGTCATTGGAGAGCTAGGGTTTCAACATCGAATCGAAAGGTCTTTGGAGAATGAAATCGAAGAAAGAACGCAAGCACAGCAAAGAGAGGGTTCGGATTTACAGACGCTGCTTTGGAGATTCTGGAAGGTGGCGGCACCGTACTGGTCCTCTGACAACAAAGTCCAGGCCAGGATGCAGCTGGGACTCGCCTGCCACTATCCCTTCTCCACTTCTCTCAGAGTCTCAGAGATCAAGTCTTATCTGAAGGCTATGCAACCAAATCTGAATGATAGTGGAAGTCCTGAAGTTGAGAATGCTTCAGAGAGAGCGCGGTTGGTGTGGATAGTAGTAACATTGCTTACATTGAAGGGGATGAAGAAAACAGAAAGGGCAACCTCTCCAACATCTGAGCAGCTGGCATCCTTAAATCTAAATGAAGGGAGAAATACTGTAACTTTCACTTTCTCTACTGCGATGCTAGGAAAGCAGCAGATGTACTTACTGTGCTTCCTTATAATTTTTGGTTCACTACAAGTTGATGCCAGAATTTATCTTTGGAAATGGAATACTCATATAGTGATATCAGATATGGATGGGACAATCACAAAATCAAACGTTCTAGGTCAGTTCATGCCCTTGGTTGGGGTAGATTGGTCACAAACATGTGTCACACATTTGTTTTCAATATTAAGGTTTGAAAATAGATATGAATTCCTTTTTTTGAGTGCTCGTGCCATTTCTCAGTCCTCTCAGACACAACAATTTTTATTTAACACTAAGCAGGATGGGAAGGCTTTACCTGATGGGCCCGTTGTTATTTCTCCGGATGGACTTTTTCCTTCTCTTTTTCGGGAAGGTAAGGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGTTCCTTACTTTCTACCTGTTTATTTGGGATATTCACTTGTTTTTCCCACATCATCTTTTAATATATTCCTGATGGTCCCGTTCTTCGCTGGTTTTGGAAACAGAGATACTTATGAATTCAGCTACCTTAAGGTTGGAATCCCGTTGGGTAAAATCTTCATCATTAATCCTAAGACATATTCCTCCCTTCATGCTCTCGTAAATGGCATGTTTCCCCCCACAACCTCCTCACACCAGCAGGACGACTTTAATTCTTCGAATTTCTGGAAACTCCCACCACCTGATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

415

Amino Acids

47.25

Weight (kDa)

8.71

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LNS2	PF08235	152 - 377	1.4e-59	LNS2 (Lipin/Ned1/Smp2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1102500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0048511
rosa_multiflora	Rmu_co8061612.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033290
rosa_wichuraiana	Rw5G029820 Rw5G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AasI	GACNNNNNNGTC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	391
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	2 cut(s)	212, 391
AclI	AACGTT	1 cut(s)	675
AcsI	RAATTY	6 cut(s)	31, 606, 770, 932, 1070, 1213
AcuI	CTGAAG	3 cut(s)	344, 363, 384
AfaI	GTAC	2 cut(s)	221, 557
AfiI	CCNNNNNNNGG	2 cut(s)	701, 702
AflII	CTTAAG	1 cut(s)	1082
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	6 cut(s)	38, 104, 427, 744, 758, 937
AjnI	CCWGG	2 cut(s)	243, 248
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	4 cut(s)	94, 259, 475, 1077
AluI	AGCT	4 cut(s)	94, 259, 475, 1077
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	2 cut(s)	246, 866
ApaI	GGGCCC	1 cut(s)	870
ApeKI	GCWGC	4 cut(s)	187, 256, 472, 547
ApoI	RAATTY	6 cut(s)	31, 606, 770, 932, 1070, 1213
AseI	ATTAAT	1 cut(s)	1119
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	225, 866, 867, 1030
AsuII	TTCGAA	1 cut(s)	1211
AvaII	GGWCC	2 cut(s)	225, 1030
BaeGI	GKGCMC	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	870
BauI	CACGAG	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	4 cut(s)	174, 268, 484, 559
BccI	CCATC	5 cut(s)	647, 839, 857, 881, 1021
BciT130I	CCWGG	2 cut(s)	245, 250
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	95, 539, 680
BfrI	CTTAAG	1 cut(s)	1082
BisI	GCNGC	5 cut(s)	188, 213, 257, 473, 548
BlsI	GCNGC	5 cut(s)	189, 214, 258, 474, 549
Bme1390I	CCNGG	2 cut(s)	245, 250
Bme18I	GGWCC	2 cut(s)	225, 1030
BmgT120I	GGNCC	4 cut(s)	225, 866, 867, 1030
BmiI	GGNNCC	5 cut(s)	216, 868, 924, 957, 1032
BmrFI	CCNGG	2 cut(s)	245, 250
BmsI	GCATC	4 cut(s)	243, 488, 525, 589
Bpu14I	TTCGAA	1 cut(s)	1211
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	883
Bsc4I	CCNNNNNNNGG	2 cut(s)	701, 702
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	413
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	2 cut(s)	245, 250
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	6 cut(s)	258, 438, 479, 658, 850, 892
BseLI	CCNNNNNNNGG	2 cut(s)	701, 702
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	5 cut(s)	310, 318, 459, 815, 824
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	915, 1171
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	4 cut(s)	174, 268, 484, 559
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	248, 868
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	1 cut(s)	884
BslFI	GGGAC	3 cut(s)	276, 670, 1016
BslI	CCNNNNNNNGG	2 cut(s)	701, 702
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	3 cut(s)	276, 670, 1016
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	248, 868
Bsp119I	TTCGAA	1 cut(s)	1211
Bsp120I	GGGCCC	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	790, 870
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	212, 391
BspANI	GGCC	2 cut(s)	248, 868
BspCNI	CTCAG	5 cut(s)	309, 317, 460, 814, 823
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	5 cut(s)	216, 868, 924, 957, 1032
BspT104I	TTCGAA	1 cut(s)	1211
BspT107I	GGYRCC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	1082
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	789
Bst2UI	CCWGG	2 cut(s)	245, 250
Bst4CI	ACNGT	3 cut(s)	219, 511, 564
BstAFI	CTTAAG	1 cut(s)	1082
BstBI	TTCGAA	1 cut(s)	1211
BstC8I	GCNNGC	5 cut(s)	27, 153, 271, 477, 946
BstDEI	CTNAG	8 cut(s)	296, 304, 468, 801, 810, 837, 949, 1125
BstF5I	GGATG	6 cut(s)	258, 438, 479, 658, 850, 892
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 544
BstNI	CCWGG	2 cut(s)	245, 250
BstNSI	RCATGY	3 cut(s)	726, 948, 1165
BstSCI	CCNGG	2 cut(s)	243, 248
BstSLI	GKGCMC	1 cut(s)	870
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	4 cut(s)	174, 268, 484, 559
BsuRI	GGCC	2 cut(s)	248, 868
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	6 cut(s)	258, 438, 479, 658, 850, 892
Cac8I	GCNNGC	5 cut(s)	27, 153, 271, 477, 946
CaiI	CAGNNNCTG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	225, 866, 867, 1030
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	220, 556
CviAII	CATG	6 cut(s)	691, 723, 929, 945, 1145, 1162
CviJI	RGCY	9 cut(s)	94, 248, 259, 329, 475, 854, 868, 923, 1077
CviKI_1	RGCY	9 cut(s)	94, 248, 259, 329, 475, 854, 868, 923, 1077
CviQI	GTAC	2 cut(s)	220, 556
DdeI	CTNAG	8 cut(s)	296, 304, 468, 801, 810, 837, 949, 1125
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	870
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	225, 1030
Eco57I	CTGAAG	3 cut(s)	344, 363, 384
EcoRI	GAATTC	3 cut(s)	770, 932, 1070
EcoRII	CCWGG	2 cut(s)	243, 248
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	870
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	6 cut(s)	694, 726, 932, 948, 1148, 1165
FaqI	GGGAC	3 cut(s)	276, 670, 1016
FatI	CATG	6 cut(s)	690, 722, 928, 944, 1144, 1161
Fnu4HI	GCNGC	5 cut(s)	188, 213, 257, 473, 548
FokI	GGATG	6 cut(s)	265, 445, 466, 665, 857, 899
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	5 cut(s)	188, 213, 257, 473, 548
FspBI	CTAG	3 cut(s)	95, 539, 680
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	5 cut(s)	188, 213, 257, 473, 548
GsaI	CCCAGC	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	248, 868
HapII	CCGG	1 cut(s)	884
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	6 cut(s)	694, 726, 932, 948, 1148, 1165
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	6 cut(s)	73, 111, 198, 264, 300, 1092
HpaII	CCGG	1 cut(s)	884
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188III	TCNNGA	8 cut(s)	202, 362, 884, 911, 929, 937, 1024, 1219
Hpy8I	GTNNAC	1 cut(s)	587
HpyAV	CCTTC	9 cut(s)	199, 292, 319, 421, 491, 844, 908, 909, 1151
HpyCH4III	ACNGT	3 cut(s)	219, 511, 564
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	3 cut(s)	256, 334, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 544
HpyF3I	CTNAG	8 cut(s)	296, 304, 468, 801, 810, 837, 949, 1125
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	694, 726, 932, 948, 1148, 1165
HspAI	GCGC	1 cut(s)	389
Kpn2I	TCCGGA	1 cut(s)	883
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	4 cut(s)	174, 268, 484, 559
LweI	GCATC	4 cut(s)	243, 488, 525, 589
MaeI	CTAG	3 cut(s)	95, 539, 680
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	4 cut(s)	409, 511, 714, 727
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	5 cut(s)	152, 448, 1030, 1102, 1200
MhlI	GDGCHC	2 cut(s)	790, 870
MlyI	GAGTC	2 cut(s)	258, 309
MmeI	TCCRAC	2 cut(s)	485, 1069
MnlI	CCTC	9 cut(s)	160, 238, 466, 817, 936, 946, 1147, 1189, 1192
MroI	TCCGGA	1 cut(s)	883
MseI	TTAA	7 cut(s)	485, 749, 831, 1014, 1083, 1119, 1203
MslI	CAYNNNNRTG	1 cut(s)	721
MspA1I	CMGCKG	2 cut(s)	259, 475
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	1 cut(s)	884
MspR9I	CCNGG	2 cut(s)	245, 250
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	245, 250
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	157, 544
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	6 cut(s)	694, 726, 932, 948, 1148, 1165
NlaIV	GGNNCC	5 cut(s)	216, 868, 924, 957, 1032
NmuCI	GTSAC	2 cut(s)	714, 727
NspI	RCATGY	3 cut(s)	726, 948, 1165
NspV	TTCGAA	1 cut(s)	1211
PaeI	GCATGC	1 cut(s)	948
PagI	TCATGA	1 cut(s)	928
PciI	ACATGT	1 cut(s)	722
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	4 cut(s)	73, 111, 198, 1092
PkrI	GCNGC	5 cut(s)	189, 214, 258, 474, 549
PleI	GAGTC	2 cut(s)	258, 308
PpsI	GAGTC	2 cut(s)	258, 308
PscI	ACATGT	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	1119
PsiI	TTATAA	1 cut(s)	575
Psp1406I	AACGTT	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	243, 248
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	2 cut(s)	243, 248
PspN4I	GGNNCC	5 cut(s)	216, 868, 924, 957, 1032
PspOMI	GGGCCC	1 cut(s)	866
PspPI	GGNCC	4 cut(s)	225, 866, 867, 1030
PstNI	CAGNNNCTG	1 cut(s)	187
PvuII	CAGCTG	2 cut(s)	259, 475
RsaI	GTAC	2 cut(s)	221, 557
RsaNI	GTAC	2 cut(s)	220, 556
RseI	CAYNNNNRTG	1 cut(s)	721
SaqAI	TTAA	7 cut(s)	485, 749, 831, 1014, 1083, 1119, 1203
SatI	GCNGC	5 cut(s)	188, 213, 257, 473, 548
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	4 cut(s)	225, 866, 867, 1030
SchI	GAGTC	2 cut(s)	258, 309
ScrFI	CCNGG	2 cut(s)	245, 250
SduI	GDGCHC	2 cut(s)	790, 870
SfaNI	GCATC	4 cut(s)	243, 488, 525, 589
SfuI	TTCGAA	1 cut(s)	1211
SinI	GGWCC	2 cut(s)	225, 1030
SmiMI	CAYNNNNRTG	1 cut(s)	721
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
SphI	GCATGC	1 cut(s)	948
SsiI	CCGC	2 cut(s)	212, 391
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	3 cut(s)	95, 539, 680
StyD4I	CCNGG	2 cut(s)	243, 248
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	3 cut(s)	219, 511, 564
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	7 cut(s)	15, 71, 76, 109, 114, 138, 1211
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	4 cut(s)	73, 111, 198, 1092
Tru1I	TTAA	7 cut(s)	485, 749, 831, 1014, 1083, 1119, 1203
Tru9I	TTAA	7 cut(s)	485, 749, 831, 1014, 1083, 1119, 1203
TseFI	GTSAC	2 cut(s)	714, 727
TseI	GCWGC	4 cut(s)	187, 256, 472, 547
Tsp45I	GTSAC	2 cut(s)	714, 727
TspDTI	ATGAA	9 cut(s)	147, 449, 510, 679, 783, 945, 1083, 1102, 1133
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	2 cut(s)	225, 1030
VspI	ATTAAT	1 cut(s)	1119
XapI	RAATTY	6 cut(s)	31, 606, 770, 932, 1070, 1213
XceI	RCATGY	3 cut(s)	726, 948, 1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	3 cut(s)	95, 539, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.