Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020389

Physical Location & Seq

Genomic Coordinates Forward (+)

46882351 .. 46905306

Gene Structure 22956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCAACCAAATCTGAATGATAGTGGAAGTCCTGAAGTTGAGAATGCTTCAGAGAGAGCGCGGTTGGTGTGGATAGTAGTAACATTGCTTACATTGAAGGGGATGAAGAAAACAGAAAGGGCAACCTCTCCAACATCTGAGCAGCTGGCATCCTTAAATCTAAATGAAGGGAGAAATACTGTAACTTTCACTTTCTCTACTGCGATGCTAGGAAAGCAGCAGGTTGATGCCAGAATTTATCTTTGGAAATCGAATACTCATATAGTGCTCTCAGATGTGGATGGGACAATCACAAAGTTCATGCCCTTGGTTAGGGTAGATTGGTCACAAACATGTGTCACACATTTGTTTTCAGCATTAAGGTTTGAAAATAGATATGAATTCCTTTTTTTGAGTGCTCGTGCCATTTCTCAGTCCTCTCAGACACAACAATTTTTATTTAACACTAAGCAGGATGGGAAGGCTTTACCTGATGGGCCCGTTGTTATTTCTCCGGATGGACTTTTTCCTTCTCTTTTTCGGGAAGTTATCCCGAGGGCTCCTCATGAATTCAAGATTGCATGCTTAGAGTTTGTTGGTAATATTTTAGTTGCACCATTCATTTCGTTTGAATATCTTATATTTTCCCCTTTTTTTTTTCACGATATTAAATCGTTGTTCCCTTCTGATTGCAGCCCGTTCTTTGCCGGTTTTGGAAACAGAGATACTTATGAATTCAGTTACCTTAAGGTTGGAATCCCGTTGGATTGTTGTGAACCGCCGTGTGTTGACGCAAAGACATATTCCTCCCTTCATGCTCTCGTAAATGGCCTGTTTCCCCCCACTCCCTCCTCACACCAGCAGGACAACTTTAATTTGTCGAATTTCTGGAAACTCCCACCACCTGATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

298

Amino Acids

33.53

Weight (kDa)

5.88

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LNS2	PF08235	42 - 197	3.3e-51	LNS2 (Lipin/Ned1/Smp2)
LNS2	PF08235	213 - 247	1.3e-06	LNS2 (Lipin/Ned1/Smp2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1102500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0048511
rosa_multiflora	Rmu_co8061612.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033290
rosa_wichuraiana	Rw5G029820 Rw5G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	2 cut(s)	61, 758
AcsI	RAATTY	5 cut(s)	234, 380, 548, 713, 862
AcuI	CTGAAG	2 cut(s)	33, 54
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	97, 368, 553, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	2 cut(s)	270, 400
Ama87I	CYCGRG	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	2 cut(s)	476, 808
ApaI	GGGCCC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	142, 217, 672
ApoI	RAATTY	5 cut(s)	234, 380, 548, 713, 862
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	476, 477
AvaI	CYCGRG	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	480, 541
BauI	CACGAG	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	270, 400
BbvI	GCAGC	3 cut(s)	154, 229, 684
BccI	CCATC	4 cut(s)	275, 449, 467, 491
BceAI	ACGGC	1 cut(s)	745
BfaI	CTAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	725
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	143, 218, 673
BlsI	GCNGC	3 cut(s)	144, 219, 674
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	476, 477
BmiI	GGNNCC	2 cut(s)	478, 540
BmsI	GCATC	3 cut(s)	158, 195, 217
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BsaJI	CCNNGG	2 cut(s)	306, 533
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	306, 533
BseGI	GGATG	5 cut(s)	108, 149, 286, 460, 502
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	4 cut(s)	129, 285, 425, 434
BseRI	GAGGAG	2 cut(s)	531, 820
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	154, 229, 684
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	478, 810
BsiHKAI	GWGCWC	2 cut(s)	270, 400
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	494, 687
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	478, 810
BsoBI	CYCGRG	1 cut(s)	532
Bsp120I	GGGCCC	1 cut(s)	476
Bsp1286I	GDGCHC	4 cut(s)	270, 400, 480, 541
Bsp13I	TCCGGA	1 cut(s)	493
BspACI	CCGC	2 cut(s)	61, 758
BspANI	GGCC	2 cut(s)	478, 810
BspCNI	CTCAG	4 cut(s)	130, 284, 424, 433
BspEI	TCCGGA	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	478, 540
BspMI	ACCTGC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	306, 533
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	181
BstAFI	CTTAAG	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	147, 562
BstDEI	CTNAG	6 cut(s)	138, 271, 411, 420, 447, 565
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	108, 149, 286, 460, 502
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	2 cut(s)	336, 564
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	154, 229, 684
BsuRI	GGCC	2 cut(s)	478, 810
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	5 cut(s)	108, 149, 286, 460, 502
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	147, 562
CciI	TCATGA	1 cut(s)	544
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	2 cut(s)	476, 477
CseI	GACGC	1 cut(s)	779
CviAII	CATG	5 cut(s)	301, 333, 545, 561, 794
CviJI	RGCY	6 cut(s)	145, 464, 478, 539, 675, 810
CviKI_1	RGCY	6 cut(s)	145, 464, 478, 539, 675, 810
DdeI	CTNAG	6 cut(s)	138, 271, 411, 420, 447, 565
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	480, 541
Eco57I	CTGAAG	2 cut(s)	33, 54
Eco88I	CYCGRG	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoRI	GAATTC	3 cut(s)	380, 548, 713
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	480, 541
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	304, 336, 548, 564, 797
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	300, 332, 544, 560, 793
Fnu4HI	GCNGC	3 cut(s)	143, 218, 673
FokI	GGATG	5 cut(s)	115, 136, 293, 467, 509
FriOI	GRGCYC	2 cut(s)	480, 541
Fsp4HI	GCNGC	3 cut(s)	143, 218, 673
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	143, 218, 673
HaeIII	GGCC	2 cut(s)	478, 810
HapII	CCGG	2 cut(s)	494, 687
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	5 cut(s)	304, 336, 548, 564, 797
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	1 cut(s)	735
HpaII	CCGG	2 cut(s)	494, 687
Hpy166II	GTNNAC	2 cut(s)	755, 769
Hpy188I	TCNGA	6 cut(s)	15, 52, 139, 274, 423, 667
Hpy188III	TCNNGA	8 cut(s)	32, 494, 521, 532, 545, 553, 641, 868
Hpy8I	GTNNAC	2 cut(s)	755, 769
HpyAV	CCTTC	6 cut(s)	91, 161, 454, 519, 672, 800
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	4, 560, 593, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	6 cut(s)	138, 271, 411, 420, 447, 565
Hsp92II	CATG	5 cut(s)	304, 336, 548, 564, 797
HspAI	GCGC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	3 cut(s)	154, 229, 684
LweI	GCATC	3 cut(s)	158, 195, 217
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	5 cut(s)	79, 181, 324, 337, 719
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	4 cut(s)	270, 400, 480, 541
MluCI	AATT	7 cut(s)	234, 380, 431, 548, 713, 853, 862
MmeI	TCCRAC	3 cut(s)	155, 712, 723
MnlI	CCTC	7 cut(s)	136, 427, 528, 552, 796, 838, 841
MroI	TCCGGA	1 cut(s)	493
MseI	TTAA	6 cut(s)	155, 359, 441, 648, 726, 852
MslI	CAYNNNNRTG	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	2 cut(s)	494, 687
Mva1269I	GAATGC	1 cut(s)	49
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	304, 336, 548, 564, 797
NlaIV	GGNNCC	2 cut(s)	478, 540
NmuCI	GTSAC	2 cut(s)	324, 337
NspI	RCATGY	2 cut(s)	336, 564
PaeI	GCATGC	1 cut(s)	564
PagI	TCATGA	1 cut(s)	544
PciI	ACATGT	1 cut(s)	332
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	144, 219, 674
PscI	ACATGT	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	478, 540
PspOMI	GGGCCC	1 cut(s)	476
PspPI	GGNCC	2 cut(s)	476, 477
PvuII	CAGCTG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	6 cut(s)	155, 359, 441, 648, 726, 852
SatI	GCNGC	3 cut(s)	143, 218, 673
Sau96I	GGNCC	2 cut(s)	476, 477
SduI	GDGCHC	4 cut(s)	270, 400, 480, 541
SetI	ASST	8 cut(s)	128, 147, 225, 365, 472, 726, 732, 886
SfaNI	GCATC	3 cut(s)	158, 195, 217
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SphI	GCATGC	1 cut(s)	564
Sse9I	AATT	7 cut(s)	234, 380, 431, 548, 713, 853, 862
SsiI	CCGC	2 cut(s)	61, 758
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	251, 860
TasI	AATT	7 cut(s)	234, 380, 431, 548, 713, 853, 862
TfiI	GAWTC	1 cut(s)	735
Tru1I	TTAA	6 cut(s)	155, 359, 441, 648, 726, 852
Tru9I	TTAA	6 cut(s)	155, 359, 441, 648, 726, 852
TseFI	GTSAC	2 cut(s)	324, 337
TseI	GCWGC	3 cut(s)	142, 217, 672
Tsp45I	GTSAC	2 cut(s)	324, 337
TspDTI	ATGAA	8 cut(s)	119, 180, 289, 393, 561, 589, 726, 782
Vha464I	CTTAAG	1 cut(s)	725
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	5 cut(s)	234, 380, 548, 713, 862
XceI	RCATGY	2 cut(s)	336, 564
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.