Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020389

Physical Location & Seq

Genomic Coordinates Reverse (-)

48022380 .. 48023609

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTAATTATCCCGAGGGCTCCTCATGAATTCAAGATAGCATGCTTAGAGGATATCAAATCGTTGTTCCCTTTTGATTGCAGCCCGTTCTTTGCTGGTTTTGGAAACAGAGATACTTATGAATTCAGCTACCTTAAGGTTGGAATCCCGTGGGGTAAAATCTTCATCATTAATCCTAAGGGTGAGATTGTTGTGAACCGCCGTGTGTTGAAGCAAAGACATGTTCCTCCCTTCATGCTCTCGACGACTTTAATTCGTCGAATTTCTGGAAACTCCCACCACCTGATGTCAGTTGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

100

Amino Acids

11.46

Weight (kDa)

9.83

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LNS2	PF08235	3 - 67	1.4e-21	LNS2 (Lipin/Ned1/Smp2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1102500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0048511
rosa_multiflora	Rmu_co8061612.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033290
rosa_wichuraiana	Rw5G029820 Rw5G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	29, 122, 261
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	34, 211
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	29, 122, 261
AseI	ATTAAT	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaJI	CCNNGG	2 cut(s)	14, 149
Bse21I	CCTNAGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	14, 149
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	14, 149
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	46, 177
BstDSI	CCRYGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	45, 224
BstV1I	GCAGC	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	25
CviAII	CATG	4 cut(s)	26, 42, 221, 235
CviJI	RGCY	3 cut(s)	20, 84, 129
CviKI_1	RGCY	3 cut(s)	20, 84, 129
DdeI	CTNAG	2 cut(s)	46, 177
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	13
EcoRI	GAATTC	2 cut(s)	29, 122
EcoRV	GATATC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	4 cut(s)	29, 45, 224, 238
FaiI	YATR	6 cut(s)	27, 43, 120, 222, 236, 301
FatI	CATG	4 cut(s)	25, 41, 220, 234
Fnu4HI	GCNGC	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	29, 45, 224, 238
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	5 cut(s)	13, 26, 34, 241, 267
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	247, 261
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	46, 177
Hsp92II	CATG	4 cut(s)	29, 45, 224, 238
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	81, 252, 296
Lsp1109I	GCAGC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	5 cut(s)	6, 29, 122, 252, 261
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	9, 33, 43, 237
MseI	TTAA	3 cut(s)	135, 171, 251
MspCI	CTTAAG	1 cut(s)	134
NlaIII	CATG	4 cut(s)	29, 45, 224, 238
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	2 cut(s)	45, 224
PaeI	GCATGC	1 cut(s)	45
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	135, 171, 251
SatI	GCNGC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	131, 135, 141, 285
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	45
Sse9I	AATT	5 cut(s)	6, 29, 122, 252, 261
SsiI	CCGC	1 cut(s)	199
TaqI	TCGA	2 cut(s)	242, 259
TasI	AATT	5 cut(s)	6, 29, 122, 252, 261
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	3 cut(s)	135, 171, 251
Tru9I	TTAA	3 cut(s)	135, 171, 251
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	42, 135, 154, 223
Vha464I	CTTAAG	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	3 cut(s)	29, 122, 261
XceI	RCATGY	2 cut(s)	45, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.