RchiOBHm_Chr5g0050941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019884
Physical Location & Seq
Forward (+)
51798900 .. 51800127
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32846

Sequence Viewer

Length: 537 bp
ATGAAGGGAAAAATAACACACGCACTCTCTGTTTCTCTGTCTCTCTCTGTGTTCCTCTCGTCCTGCATATCGAAGGAGCTCAAATCCAAAGCGAGCCCAGCACCTGCAGTAGTAGATTTATTGCTACAAATCGAGCAATCAAAAGGTGGAGGAGATCCAGCCTGGCACGAGCGGCTAAACCCTGACCGTCAAGGTCGTCACCACCAATCTGGTCGAGAGGTCACCTCCAAGAATGGCGGTGCTCGATCCTCTCTCTCGTCTCTCCCTCTTCAGCCCCCTCGCATCACTGAGTGCCTCGTTAGCGATGAGACTGGAACCATTGTCTTCACTGCTCGCAATGACCAAGTTGACATTATGAAGCCTAGTACCACTGTGATTCCACGCAATACAAAGATTGACATGTTCATCAAAGGCACTATGAGGCTTGCAGTTGATAAATGGGGTTGTGTTGAAGTCACAGAACCAGCCAGCTTTGAAGTTAAAGAGGTCAACAATCTTTCTCTTGTCGAGTATGAATTACTTAGTGTTGCTGAATGA

Protein Analysis

178

Amino Acids

19.41

Weight (kDa)

6.91

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 73 - 152 4.9e-29 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019884)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0107141 RchiOBHm_Chr5g0050941
rosa_multiflora Rmu_sc0002539.1_g000047 Rmu_sc0002676.1_g000003
rosa_roxburghii Rroxscaffold_3G00239490
rosa_rugosa Rorug05G0382400
rosa_samantha Rh5DG359800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 2 cut(s) 172, 237
AclWI GGATC 2 cut(s) 149, 240
AcuI CTGAAG 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 1 cut(s) 367
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 2 cut(s) 452, 476
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 2 cut(s) 79, 471
AluI AGCT 2 cut(s) 79, 471
Alw21I GWGCWC 2 cut(s) 81, 244
Alw26I GTCTC 3 cut(s) 45, 264, 302
AlwI GGATC 2 cut(s) 149, 240
AlwNI CAGNNNCTG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 191, 214
BanII GRGCYC 2 cut(s) 81, 98
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 81, 244
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 45, 264, 302
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 81, 244
BsmAI GTCTC 3 cut(s) 45, 264, 302
BsmBI CGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 81, 98, 244
Bsp143I GATC 2 cut(s) 154, 245
BspACI CCGC 2 cut(s) 172, 237
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 149, 240
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 316
BssMI GATC 2 cut(s) 154, 245
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 188, 373
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 94, 334, 426, 469
BstDEI CTNAG 2 cut(s) 288, 521
BstEII GGTNACC 1 cut(s) 220
BstKTI GATC 2 cut(s) 157, 248
BstMAI GTCTC 3 cut(s) 45, 264, 302
BstMBI GATC 2 cut(s) 154, 245
BstMWI GCNNNNNNNGC 3 cut(s) 98, 172, 300
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 403
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 285, 327, 369
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 94, 334, 426, 469
CaiI CAGNNNCTG 1 cut(s) 104
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 400
CviJI RGCY 9 cut(s) 79, 96, 161, 175, 274, 361, 424, 467, 471
CviKI_1 RGCY 9 cut(s) 79, 96, 161, 175, 274, 361, 424, 467, 471
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 288, 521
DpnI GATC 2 cut(s) 156, 247
DpnII GATC 2 cut(s) 154, 245
DraIII CACNNNGTG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 81, 98
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 161
EcoT38I GRGCYC 2 cut(s) 81, 98
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 1 cut(s) 403
FaiI YATR 5 cut(s) 68, 356, 401, 419, 513
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 81, 98
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 403
HincII GTYRAC 2 cut(s) 349, 490
HindII GTYRAC 2 cut(s) 349, 490
HinfI GANTC 1 cut(s) 376
HphI GGTGA 2 cut(s) 191, 214
Hpy166II GTNNAC 2 cut(s) 349, 490
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 349, 490
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 188, 373
HpyCH4V TGCA 3 cut(s) 66, 107, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 172, 300
HpyF3I CTNAG 2 cut(s) 288, 521
Hsp92II CATG 1 cut(s) 403
Kzo9I GATC 2 cut(s) 154, 245
LmnI GCTCC 1 cut(s) 76
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 197, 220, 454
MalI GATC 2 cut(s) 156, 247
MbiI CCGCTC 1 cut(s) 172
MboI GATC 2 cut(s) 154, 245
MboII GAAGA 2 cut(s) 260, 316
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 3 cut(s) 81, 98, 244
MluCI AATT 1 cut(s) 515
MseI TTAA 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 98, 172, 300
NdeII GATC 2 cut(s) 154, 245
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 3 cut(s) 197, 220, 454
NspI RCATGY 1 cut(s) 403
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 399
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 174
PscI ACATGT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 161
PspEI GGTNACC 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 316
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 154, 245
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 3 cut(s) 81, 98, 244
SetI ASST 8 cut(s) 81, 106, 148, 196, 222, 227, 473, 489
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 1 cut(s) 515
SsiI CCGC 2 cut(s) 172, 237
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 188, 373
TaqI TCGA 5 cut(s) 71, 132, 214, 244, 507
TasI AATT 1 cut(s) 515
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 3 cut(s) 292, 334, 376
TseFI GTSAC 3 cut(s) 197, 220, 454
Tsp45I GTSAC 3 cut(s) 197, 220, 454
TspDTI ATGAA 4 cut(s) 17, 371, 394, 528
TspRI CASTG 3 cut(s) 292, 334, 376
XceI RCATGY 1 cut(s) 403
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.