Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0019884

Physical Location & Seq

Genomic Coordinates Reverse (-)

16415 .. 17519

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgaatagcctagcacctgcagtagtagatttattgctactaatcgagcaatcaaaaggtggaggagatctagcctggcacgagcggctaaaccctgaccgtcaaggtcgtcaccaccaatccggtcgagaggtcacctccaagaatggcggtgctcgatcctctctctcctccctccctcttcagccaactcgcatcactgagtgcctcgttagcgatgagactggaaccattgtcttcattgctcgcaatgaccaagttgacattatgaagcctggtaccactgtgattccacgcaatgcaaagattgacatgttcatcaaaggcactatgaggcttgcagttgataaatggggtcgtgttgaagtcacagaaccagccagctttgaagttaaggaggtcaacaatctttctcttgtcgagtatgaattacttagtgttgctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.41

Weight (kDa)

5.66

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019884)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107141 RchiOBHm_Chr5g0050941
rosa_multiflora	Rmu_sc0002539.1_g000047 Rmu_sc0002676.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239490
rosa_rugosa	Rorug05G0382400
rosa_samantha	Rh5DG359800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	25
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	2 cut(s)	85, 150
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	365, 389
AjnI	CCWGG	2 cut(s)	74, 274
AluBI	AGCT	1 cut(s)	384
AluI	AGCT	1 cut(s)	384
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	153
Asp718I	GGTACC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	104, 127
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	76, 276
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	11, 71
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	76, 276
BmiI	GGNNCC	2 cut(s)	229, 280
BmrFI	CCNGG	2 cut(s)	76, 276
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BsaWI	WCCGGW	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	3 cut(s)	240, 256, 304
BseBI	CCWGG	2 cut(s)	76, 276
BseMI	GCAATG	3 cut(s)	240, 256, 304
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	78, 160
Bsh1285I	CGRYCG	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	67, 158
BspACI	CCGC	2 cut(s)	85, 150
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	229, 280
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	240, 256, 304
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	67, 158
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	76, 276
Bst4CI	ACNGT	2 cut(s)	101, 286
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	247, 339, 382
BstDEI	CTNAG	2 cut(s)	201, 434
BstEII	GGTNACC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	70, 161
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	67, 158
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 213
BstNI	CCWGG	2 cut(s)	76, 276
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	74, 274
BstSFI	CTRYAG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	198, 282
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	247, 339, 382
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	8 cut(s)	9, 74, 88, 187, 274, 337, 380, 384
CviKI_1	RGCY	8 cut(s)	9, 74, 88, 187, 274, 337, 380, 384
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	201, 434
DpnI	GATC	2 cut(s)	69, 160
DpnII	GATC	2 cut(s)	67, 158
DraIII	CACNNNGTG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	74, 274
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	269, 314, 332, 426
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	2 cut(s)	11, 71
GluI	GCNGC	1 cut(s)	86
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	316
HincII	GTYRAC	2 cut(s)	262, 403
HindII	GTYRAC	2 cut(s)	262, 403
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	104, 127
Hpy166II	GTNNAC	2 cut(s)	262, 403
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	262, 403
HpyCH4III	ACNGT	2 cut(s)	101, 286
HpyCH4V	TGCA	3 cut(s)	20, 302, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 213
HpyF3I	CTNAG	2 cut(s)	201, 434
Hsp92II	CATG	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	67, 158
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	11, 71
MaeIII	GTNAC	3 cut(s)	110, 133, 367
MalI	GATC	2 cut(s)	69, 160
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	2 cut(s)	67, 158
MboII	GAAGA	2 cut(s)	173, 229
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	428
MseI	TTAA	1 cut(s)	393
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	76, 276
MvaI	CCWGG	2 cut(s)	76, 276
MwoI	GCNNNNNNNGC	2 cut(s)	85, 213
NdeII	GATC	2 cut(s)	67, 158
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	229, 280
NmuCI	GTSAC	3 cut(s)	110, 133, 367
NspI	RCATGY	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	25
PciI	ACATGT	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	74, 274
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	74, 274
PspN4I	GGNNCC	2 cut(s)	229, 280
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	67, 158
ScrFI	CCNGG	2 cut(s)	76, 276
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	7 cut(s)	19, 61, 109, 135, 140, 386, 402
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	85, 150
SspMI	CTAG	2 cut(s)	11, 71
StyD4I	CCNGG	2 cut(s)	74, 274
TaaI	ACNGT	2 cut(s)	101, 286
TaqI	TCGA	4 cut(s)	45, 127, 157, 420
TasI	AATT	1 cut(s)	428
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	205, 289
TseFI	GTSAC	3 cut(s)	110, 133, 367
Tsp45I	GTSAC	3 cut(s)	110, 133, 367
TspDTI	ATGAA	5 cut(s)	17, 229, 284, 307, 441
TspRI	CASTG	2 cut(s)	205, 289
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	2 cut(s)	11, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.